Re: [PyMOL] Show Sticks - Turns Molecule Blue
Assuming you're using a recent version of openSUSE (11.3, 11.4, or Factory), feel free to grab the svn compiled version from http://software.opensuse.org/download.html?project=devel:languages:pythonpackage=pymol -David 2011/9/11 Troels Emtekær Linnet tlin...@gmail.com: This should get you on the way on compiling from svn. http://www.pymolwiki.org/index.php/Linux_Install#Mint11_Linux_.28Ubuntu.29_-_Tested_for_PyMOL_1.4.1 Best Troels 2011/9/9 Sean Law magic...@hotmail.com Hi PyMOLers, I have tried installing both PyMOL 1.3 and PyMOL 1.4.1 on OpenSuse (old Pentium 4) and am finding that when I load a molecule and click Show -- Sticks that the entire molecular gets colored blue (originally the green default lines color). After trying to change the color (Color -- Elements), it doesn't alter the color at all. However, hiding the sticks representation takes me back to the hidden green default lines color. I'm not sure if this is because I'm using an old computer or if I'm missing something (i.e. libraries). Any suggestions would be greatly appreciated. Thanks Sean -- Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study that outlines how and why cloud computing security and archiving is rapidly being adopted across the IT space for its ease of implementation, lower cost, and increased reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Using storage to extend the benefits of virtualization and iSCSI Virtualization increases hardware utilization and delivers a new level of agility. Learn what those decisions are and how to modernize your storage and backup environments for virtualization. http://www.accelacomm.com/jaw/sfnl/114/51434361/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Using storage to extend the benefits of virtualization and iSCSI Virtualization increases hardware utilization and delivers a new level of agility. Learn what those decisions are and how to modernize your storage and backup environments for virtualization. http://www.accelacomm.com/jaw/sfnl/114/51434361/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Show Sticks - Turns Molecule Blue
Hi Sean, This problem was fixed after the official v1.4.1 release. So, you will have to compile a newer version from SVN or download a precompiled Incentive version if you have access. If you can't do any of those, then try upgrading your video drivers--that worked for a fraction of our audience as well. This was known to happen on some Intel video cards. Cheers, -- Jason On Fri, Sep 9, 2011 at 11:24 AM, Sean Law magic...@hotmail.com wrote: Hi PyMOLers, I have tried installing both PyMOL 1.3 and PyMOL 1.4.1 on OpenSuse (old Pentium 4) and am finding that when I load a molecule and click Show -- Sticks that the entire molecular gets colored blue (originally the green default lines color). After trying to change the color (Color -- Elements), it doesn't alter the color at all. However, hiding the sticks representation takes me back to the hidden green default lines color. I'm not sure if this is because I'm using an old computer or if I'm missing something (i.e. libraries). Any suggestions would be greatly appreciated. Thanks Sean -- Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study that outlines how and why cloud computing security and archiving is rapidly being adopted across the IT space for its ease of implementation, lower cost, and increased reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study that outlines how and why cloud computing security and archiving is rapidly being adopted across the IT space for its ease of implementation, lower cost, and increased reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
