Re: [PyMOL] where can I ask questions? Is there any forum?

2024-04-01 Thread Elizabeth Tsakelidou 
Thank you very much for your reply.
I will work some things that are seemingly working
for the moment
and if I see this does not lead anywhere, I ll come back to you.

Greetings,
Elizabeth

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From: Dr. Vijay Masand 
Sent: Monday, April 1, 2024 5:02 PM
To: Elizabeth Tsakelidou 
Cc: pymol-users 
Subject: Re: [PyMOL] where can I ask questions? Is there any forum?

Dear Elizabeth
A simple solution is to use DockingApp in Windows. Downliad it from following 
site:
http://www.computationalbiology.it/software.html
It is very easy to use it. Contact if you need any help.
From
Dr. Vijay H. Masand


On Mon, 1 Apr, 2024, 8:55 pm Elizabeth Tsakelidou, 
mailto:[email protected]>> wrote:

Hey

I would like to know what is the best way to install and work protein-ligand 
docking.
I have Windows 11 and I tried Anaconda PyMOL but I think this way
you cannot have all plugins available.
So, what if I tried ubuntu with all is available on GitHub?
Can I do this?
The query arises because it is said that if you want to install linux in windows
you better use cygwin.
What do you think?
Thanks

Elizabeth

Sent from Outlook<http://aka.ms/weboutlook>

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Re: [PyMOL] where can I ask questions? Is there any forum?

2024-04-01 Thread Dr. Vijay Masand 
Dear Elizabeth
A simple solution is to use DockingApp in Windows. Downliad it from
following site:
http://www.computationalbiology.it/software.html
It is very easy to use it. Contact if you need any help.
From
Dr. Vijay H. Masand


On Mon, 1 Apr, 2024, 8:55 pm Elizabeth Tsakelidou, 
wrote:

>
> Hey
>
> I would like to know what is the best way to install and work
> protein-ligand docking.
> I have Windows 11 and I tried Anaconda PyMOL but I think this way
> you cannot have all plugins available.
> So, what if I tried ubuntu with all is available on GitHub?
> Can I do this?
> The query arises because it is said that if you want to install linux in
> windows
> you better use cygwin.
> What do you think?
> Thanks
>
> Elizabeth
>
> Sent from Outlook 
> ___
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/[email protected]
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Re: [PyMOL] where can I ask questions? Is there any forum?

2024-04-01 Thread Tamas Hegedus 
Hi,

I think that you have two issues:

#1 pymol autodock/vina plugin; it should work on windows, since it is written 
in python. The issue u might encounter: it may have written in an older python 
version than the pymol install

#2 you have to perform the docking with autodock or autodock vina. I think that 
these will not run on win.
You also have to prepare the prot and small molecule w autodocktools. Some gui 
apps might have preparation wizard.

Bests



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2024. ápr. 1. 17:23-n, 17:23-kor, Elizabeth Tsakelidou  
ezt írta:
>
>Hey
>
>I would like to know what is the best way to install and work
>protein-ligand docking.
>I have Windows 11 and I tried Anaconda PyMOL but I think this way
>you cannot have all plugins available.
>So, what if I tried ubuntu with all is available on GitHub?
>Can I do this?
>The query arises because it is said that if you want to install linux
>in windows
>you better use cygwin.
>What do you think?
>Thanks
>
>Elizabeth
>
>Sent from Outlook
>
>
>
>
>
>
>
>
>___
>PyMOL-users mailing list
>Archives: http://www.mail-archive.com/[email protected]
>Unsubscribe:
>https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
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