Re: [Pytables-users] symbol not found _H5T_STD_I64LE_g

2010-05-27 Thread Tony Theodore
On 27 May 2010 09:43, Brett Calcott wrote: > > > On 27 May 2010 00:57, Brandt Belson wrote: >> >> Thanks for your help. I followed your directions. First, I checked the >> file type of python (which I installed from python.org): >> $ file /Library/Frameworks/Python.framework/Versions/2.6/bin/pyth

Re: [Pytables-users] symbol not found _H5T_STD_I64LE_g

2010-05-27 Thread Brandt Belson
Hi guys, I have good news! I had unusual problems installing other things, so I decided to reinstall OSX. Then I installed python from python.org with the .dmg installer, then numpy, then hdf5 into /usr/local, and then easy_install tables worked perfectly. I ran tables.test() and it passed. I don'

Re: [Pytables-users] symbol not found _H5T_STD_I64LE_g

2010-05-27 Thread Tony Theodore
On 28 May 2010 02:44, Brandt Belson wrote: > Hi guys, > I have good news! I had unusual problems installing other things, so I > decided to reinstall OSX. Then I installed python from python.org with the > .dmg installer, then numpy, then hdf5 into /usr/local, and then easy_install > tables worked

Re: [Pytables-users] symbol not found _H5T_STD_I64LE_g

2010-05-27 Thread Brandt Belson
I had other things working with hdf5 before when it wasn't in /usr/local, so I don't know what was going on. I'll be using pytables to put my simulation data (for fluid dynamics) into a format that I can visualize with a program called VisIt. I'm also trying to use h5py, but I have numerous proble

[Pytables-users] Linux install - "error: mpi.h: No such file or directory"

2010-05-27 Thread Brandt Belson
Hi, I'm trying to install pytables on a linux cluster and I do not have root access. I installed my own versions of python, numpy, and easy_install locally. Now when I try to use easy_install tables and from source (using python setup.py build_ext --inplace), I get an error. I set the env var HDF5_

Re: [Pytables-users] Linux install - "error: mpi.h: No such file or directory"

2010-05-27 Thread Brandt Belson
Hi, I used the -I option to specify the location of the header fiels, which I didn't know existed for the setup.py script, but now I have a new error: login1% setenv HDF5_DIR $TACC_HDF5_DIR login1% python setup.py build_ext -I/${MPICH_HOME}/include --inplace * Found numpy 1.4.1 package installed.