Re: [Pytables-users] openFile seems to hang

2012-08-07 Thread Daniel Wheeler
On Mon, Aug 6, 2012 at 6:32 PM, Anthony Scopatz wrote: > On Mon, Aug 6, 2012 at 5:25 PM, Daniel Wheeler > wrote: > >> >> > Hmm interesting. Was your HDF5 itself configured & compiled with MPI > support? Or are you using a serial version? > Yes, compiled with MPI support. -- Daniel Wheeler

Re: [Pytables-users] openFile seems to hang

2012-08-07 Thread Anthony Scopatz
Yeah, that is probably it. There is probably some weird overlap of resources for fipy and hdf5. Sorry, I don't know what we can do about this, but I would bring it up with the fipy people. They should know what do do and how to fix it. Be Well Anthony On Tue, Aug 7, 2012 at 8:22 AM, Daniel Whe

Re: [Pytables-users] openFile seems to hang

2012-08-07 Thread Daniel Wheeler
On Tue, Aug 7, 2012 at 11:49 AM, Anthony Scopatz wrote: > Yeah, that is probably it. There is probably some weird overlap > of resources for fipy and hdf5. Sorry, I don't know what we can do about > this, but I would bring it up with the fipy people. I am the fipy people. > They should know

Re: [Pytables-users] openFile seems to hang

2012-08-07 Thread Anthony Scopatz
On Tue, Aug 7, 2012 at 11:43 AM, Daniel Wheeler wrote: > > > On Tue, Aug 7, 2012 at 11:49 AM, Anthony Scopatz wrote: > >> Yeah, that is probably it. There is probably some weird overlap >> of resources for fipy and hdf5. Sorry, I don't know what we can do about >> this, but I would bring it up w

Re: [Pytables-users] openFile seems to hang

2012-08-07 Thread Daniel Wheeler
On Tue, Aug 7, 2012 at 12:46 PM, Anthony Scopatz wrote: > > On Tue, Aug 7, 2012 at 11:43 AM, Daniel Wheeler > wrote: >> >> >> >>> They should know what do do and how to fix it. >> >> >> Maybe mpi init issues with either pytrilinos or mpi4py as a wild guess. >> Both are imported by fipy. >> > > Y

Re: [Pytables-users] openFile seems to hang

2012-08-07 Thread Anthony Scopatz
On Tue, Aug 7, 2012 at 11:50 AM, Daniel Wheeler wrote: > > > On Tue, Aug 7, 2012 at 12:46 PM, Anthony Scopatz wrote: > >> >> On Tue, Aug 7, 2012 at 11:43 AM, Daniel Wheeler < >> daniel.wheel...@gmail.com> wrote: >> >>> >>> They should know what do do and how to fix it. >>> >>> >>> Maybe mpi i