[issue9217] 2to3 crashes with some doctests

Changes by Éric Araujo mer...@netwok.org: -- stage: - committed/rejected status: open - closed ___ Python tracker rep...@bugs.python.org http://bugs.python.org/issue9217 ___

[issue9217] 2to3 crashes with some doctests

Jeremy Thurgood fir...@gmail.com added the comment: This seems to be fixed in 3.2 and the 2.7 maintenance branch, but here's a (one-liner) patch for people who want to fix their local installations. -- keywords: +patch nosy: +jerith Added file:

[issue9217] 2to3 crashes with some doctests

Changes by Peter p.j.a.c...@googlemail.com: -- nosy: +maubp ___ Python tracker rep...@bugs.python.org http://bugs.python.org/issue9217 ___ ___ Python-bugs-list mailing

[issue9217] 2to3 crashes with some doctests

Peter p.j.a.c...@googlemail.com added the comment: Reverted accidental title change - had keyboard focus on the page not the address bar I think. Sorry! -- title: 2to3 doctests - 2to3 crashes with some doctests ___ Python tracker

[issue9217] 2to3 crashes with some doctests

Tiago Antao tiagoan...@gmail.com added the comment: I've re-opened this bug because of the late examples that I've included that still crash. I can open a new bug if you prefer with the late examples (just tell me and I will open a new bug). This is somewhat important for us: In order to be

[issue9217] 2to3 crashes with some doctests

Éric Araujo mer...@netwok.org added the comment: Could it be because of the escaped triple quotes? -- nosy: +merwok ___ Python tracker rep...@bugs.python.org http://bugs.python.org/issue9217 ___

[issue9217] 2to3 crashes with some doctests

Tiago Antao tiagoan...@gmail.com added the comment: A few more problematic examples (hope it helps) my_mseq = MutableSeq(MKQHKAMIVALIVICITAVVAAL, \ IUPAC.protein) Note the line continuation rec.letter_annotations[secondary_structure] = \ (The same

[issue9217] 2to3 crashes with some doctests

Tiago Antao tiagoan...@gmail.com added the comment: Another example records = (record for record in \ SeqIO.parse(Roche/E3MFGYR02_random_10_reads.sff,sff) \ if record.seq[record.annotations[cli [...] Note that ... does not apply here (it will fail on python2

[issue9217] 2to3 crashes with some doctests

New submission from Tiago Antao tiagoan...@gmail.com: 2to3 -d sometimes crashes. The problem seems to be in refactor_doctest. The problematic line is: if self.log.isEnabledFor(logging.DEBUG): self.log does not exist. The error, as expected: File /usr/lib/python3.1/lib2to3/refactor.py, line

[issue9217] 2to3 crashes with some doctests

Changes by Tiago Antao tiagoan...@gmail.com: -- type: - crash ___ Python tracker rep...@bugs.python.org http://bugs.python.org/issue9217 ___ ___ Python-bugs-list mailing

[issue9217] 2to3 crashes with some doctests

Benjamin Peterson benja...@python.org added the comment: Fixed in r82779. I'm curious as to what it's failing on. -- nosy: +benjamin.peterson resolution: - fixed status: open - closed ___ Python tracker rep...@bugs.python.org

[issue9217] 2to3 crashes with some doctests

Tiago Antao tiagoan...@gmail.com added the comment: Benjamin, Thanks for the fast answer. I attach the problematic file. This file is from Biopython. We are trying to have a Python 3 version of it. We applied 2to3 (no -d) first (via distutils on setup.py build) and I was applying 2to3 -d

[issue9217] 2to3 crashes with some doctests

Tiago Antao tiagoan...@gmail.com added the comment: BTW, this happens in 2.6 also -- versions: +Python 2.6 ___ Python tracker rep...@bugs.python.org http://bugs.python.org/issue9217 ___