PyEmbedC 1.0 - Embed C in Python code

2016-01-17 Thread Fen Trias
Python module for embedding C/C++ code within Python code. It is designed to allow coders to easily speed up slow code by replacing small portions of Python with compiled C/C++ that can transparently read and modify Python variables. Keeping all the code in the same source file simplifies

anyone with genomewide microarray analysis experience ?

2009-08-14 Thread trias
Hi, I am trying to analyse some biological data from microarray experiments. Different experiments have been stored in a SQL database. One of the things I would like to do is to fetch all data from a certain distance from gene ATGs say 100+/- bp and calculate the bp average over all genes

appending values into array instead of a list

2008-12-08 Thread trias
Hi, I have this little script: import csv import numpy signal=[] ref=[] for x in csv.reader(open('reffile.csv').readlines()): ref.append(x) for x in csv.reader(open('signalfile.csv').readlines()): signal.append(x) signalarray=numpy.array(signal, dtype=float) signaldict={}