Nathan Harmston wrote:
> Currently I am working on a generic graph library so I can do various
> graph based analysis for various projects I have ideas for. Currently
> I am implementing Graph as a wrapper around a dictionary. Currently my
> implementation works like this:
>
> t = Graph()
Nathan Harmston wrote:
> Hi,
>
> It seems that by just going through the problem writing out a better
> explanation for the reply I have figured out a solution and the
> problem isnt as difficult as I thought it would be.
Often happens.
>
> What is a wontok?
It's Melanesian Pidgin (from the Eng
Hi,
It seems that by just going through the problem writing out a better
explanation for the reply I have figured out a solution and the
problem isnt as difficult as I thought it would be.
What is a wontok?
Thanks
Nathan
PS --> the start of my reply:
class Interval(object):
_id = "gene1"
Nathan Harmston wrote:
> Hi,
>
> The idea is that I m going to use it to build graphs for sequence
> alignment (at the moment), I read a discussion on the corebio
> (reimplementation of biopython) group about using intervals to
> represent sequence slices. The idea being that, my graph may contain
Nathan Harmston wrote:
>> > https://networkx.lanl.gov/
..
I got it back just once, but when I clicked again I see this
RuntimeErrorPython 2.4.4c1: /usr/bin/python
Sat Nov 25 16:21:16 2006
A problem occurred in a Python script. Here is the sequence of function
calls leading up to the e
Hi,
The idea is that I m going to use it to build graphs for sequence
alignment (at the moment), I read a discussion on the corebio
(reimplementation of biopython) group about using intervals to
represent sequence slices. The idea being that, my graph may contain
millions of alignments and storing
Nathan Harmston wrote:
> > > https://networkx.lanl.gov/
>
> This was working for me earlier, I managed to get everything from
> there earlier. It seems a very good package. It seems theres more out
> there than what I had thought, which unfortunately makes it harder for
> me to decide what to use
> > https://networkx.lanl.gov/
This was working for me earlier, I managed to get everything from
there earlier. It seems a very good package. It seems theres more out
there than what I had thought, which unfortunately makes it harder for
me to decide what to use (pynetwork and bgl look useful aswe
Szabolcs Nagy:
> i haven't read your code, but there are many graph implementations in
> python.
> in case you haven't found these yet:
> http://wiki.python.org/moin/PythonGraphApi
>
> if you only want to do some analysis i think you need this one (as it's
> pretty complete and simple):
> https://n
Szabolcs Nagy wrote:
> if you only want to do some analysis i think you need this one (as it's
> pretty complete and simple):
> https://networkx.lanl.gov/
seems to be broken at present with a python traceback coming out; not a
good advert for python and/or trac
--
Robin Becker
On Sat, 25 Nov 2006 14:05:27 +, Nathan Harmston wrote:
> Hi All,
>
> Currently I am working on a generic graph library so I can do various
> graph based analysis for various projects I have ideas for. Currently
> I am implementing Graph as a wrapper around a dictionary. Currently my
> implem
i haven't read your code, but there are many graph implementations in
python.
in case you haven't found these yet:
http://wiki.python.org/moin/PythonGraphApi
if you only want to do some analysis i think you need this one (as it's
pretty complete and simple):
https://networkx.lanl.gov/
i also reco
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