a
chance later today.
Thanks again!
Vincent
On Mon, Oct 22, 2012 at 12:45 AM, Emile van Sebille em...@fenx.com wrote:
On 10/21/2012 11:33 AM, Vincent Davis wrote:
I am looking for a good way to get every pair from a string. For example,
input:
x = 'apple'
output
'ap'
'pp'
'pl'
'le'
I
@vbr
Thats interesting. I would never have come up with that.
Vincent
On Sun, Oct 21, 2012 at 3:48 PM, Vlastimil Brom vlastimil.b...@gmail.comwrote:
vbr
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Kelly wrote:
On Sun, Oct 21, 2012 at 12:58 PM, Vincent Davis
vinc...@vincentdavis.net wrote:
x = 'apple'
for f in range(len(x)-1):
print(x[f:f+2])
@Ian,
Thanks for that I was just looking in to that. I wonder which is faster I
have a large set of strings to process. I'll try some
initiate a SMTP
server, send the attachment and shutdown the SMTP after.
Vincent Davis
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without installing additional software or using an external
server/service?
Maybe I am wrong, I thought examples like s = smtplib.SMTP('localhost')
are using a local(outside of python) smtp server, like postfix.
Vincent Davis
720-301-3003
On Fri, Dec 13, 2013 at 9:40 AM, Grant Edwards
.
Then submit the email to that address using smtplib.SMTP
Do I have that right?
Vincent Davis
720-301-3003
On Fri, Dec 13, 2013 at 10:24 AM, Dennis Lee Bieber
wlfr...@ix.netcom.comwrote:
On Thu, 12 Dec 2013 18:01:58 -0700, Vincent Davis
vinc...@vincentdavis.net declaimed the following:
I have
Grant, Chris
Thanks !!!
I guess in the end this is a bad idea, (for my purposes) I should just use
my gmail account smtp server.
Vincent Davis
720-301-3003
On Fri, Dec 13, 2013 at 11:15 AM, Chris Angelico ros...@gmail.com wrote:
On Sat, Dec 14, 2013 at 4:13 AM, Vincent Davis vinc
, megablast=True,
entrez_query=e_query, word_size='11', other_advanced='-G 5 -E 2')
return NCBIXML.read(blast_result)
Vincent Davis
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and error I suppose if the for example I lost
the connection to the internet but I am not really sure about that.
That said after some more research I found this tread.
http://lists.open-bio.org/pipermail/biopython/2013-April/008507.html
Vincent Davis
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.
Any suggestions?
Vincent Davis
720-301-3003
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(the opposite of what I want)
Vincent Davis
On Tue, Dec 31, 2013 at 6:45 PM, Jason Friedman jsf80...@gmail.com wrote:
I have a about 255 data fields that I am trying to verify on thousands of
webpages.
For example:
value: 255,000
sqft: 1800
Since I have the correct answer
of the pages, I got this from the county on
a cd, I thought defining the xpath would be easier using bs4 or
http://lxml.de/
Vincent Davis
720-301-3003
On Tue, Dec 31, 2013 at 10:30 PM, Jason Friedman jsf80...@gmail.com wrote:
For example this URL;
http://jeffco.us/ats/displaygeneral.do?sch=001690
You might think about using an array to represent the canvas. Starting with
it filled with and then for each point change it to X.
The print the rows of the array.
You can make the array/canvas arbitrarily large and then plot multiple
different paths onto the same array.
Vincent Davis
720-301
When printing the rows of the array/canvas you might add \n to the end of
each row and print the canvas all at once rather than a print statement for
each row.
Vincent Davis
720-301-3003
On Sat, Jan 4, 2014 at 3:10 PM, Vincent Davis vinc...@vincentdavis.netwrote:
You might think about using
]
else:
a = a[:t] + a[t - p] + a[t+1:]
db(t + 1, p)
for j in range(int(a[t - p]) + 1, k):
a = a[:t] + str(j) + a[t+1:]
db(t + 1, t)
return sequence
db(1, 1)
return sequence
d2 = de_bruijn_2(4, 8)
Vincent Davis
n de_brujin(k, n) and the
ordering the same ordering as found in de_brujin(k, n).
I am not really sure how to modify the algorithm to do that. Any ideas? I
won't have time to think hard about that until later.
Vincent Davis
720-301-3003
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by
itertools.permutations.
Vincent Davis
On Thu, Jan 23, 2014 at 10:18 AM, Dave Angel da...@davea.name wrote:
Vincent Davis vinc...@vincentdavis.net Wrote in message:
(something about your message seems to make it unquotable)
64gig is 4^18, so you can forget about holding a string of size 4^50
)
I am not really sure what _mapping should be. The code above does not run
because
NameError: global name '_mapping' is not defined
I tried to get the bytearray
sequence to convert to ascii but don't know how to.
Vincent Davis
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.
Thanks for pointing this out Mark, I will soon be running this on 3.3+
Vincent Davis
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import debruijn_bytes as d'
'd(4, 11)'
10 loops, best of 3: 480 msec per loop
This took ~20 secs vs .480*10
d(4, 14) takes about 24 seconds (one run)
Vincent Davis
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of times an observed sub sequence overlaps a
value in the De Bruijn sequence) The way the sub sequences overlap is
important to me and I don't see a way go from base-k (or any other base) to
the index location in the De Bruijn sequence. i.e. a decoding algorithm.
Vincent Davis
720-301-3003
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https
secs or more. The total expected minimum time without startup overhead
is then
Ah, I did not know about the calibration. That and I did not notice the
100 on my machine vs 10 on yours.
Vincent Davis
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I am working on a program to monitor directory file changes and am would
like a configuration file. This file would specify email addresses, file and
directory locations.. Is there a preferred format to use with python?
--
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Vincent Davis
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string, line 1, in fragment
MemoryError:
Python 2.7.1 |EPD 7.0-2 (32-bit)| (r271:86832, Dec 3 2010, 15:41:32)
[GCC 4.0.1 (Apple Inc. build 5488)]
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(r.keys()))
outfile.writerow(r)
Vincent Davis
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Thanks for the feedback.
Vincent Davis
720-301-3003
On Mon, Mar 24, 2014 at 1:44 PM, Chris Angelico ros...@gmail.com wrote:
On Tue, Mar 25, 2014 at 4:50 AM, Vincent Davis vinc...@vincentdavis.net
wrote:
I have several csv file I need to append (vertically). They have
different
Bio.Affy import CelFile
from bz2 import decompress,
with open('Tests/Affy/affy_v3_ex.CEL.bz2', 'rb') as handle:
cel_data = decompress(handle.read())
c = CelFile.read(cel_data)
Thanks
Vincent Davis
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'))
Vincent Davis
720-301-3003
On Sun, May 18, 2014 at 8:32 PM, Tim Chase python.l...@tim.thechases.comwrote:
On 2014-05-18 19:53, Vincent Davis wrote:
I have a file compressed with bz2 and a function that expects a
file handle. When I decompress the bz2 file I get a string (binary)
not a file
On Sun, May 18, 2014 at 9:44 PM, Ian Kelly ian.g.ke...@gmail.com wrote:
You can just use bz2.open:
with bz2.open('test.txt.bz2', 'rt', encoding='ascii') as f:
... print(f.read())
Thanks I like that better then my solution.
Vincent Davis
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How do I get the bit version of the installed python. In my case, osx
python2.7 binary installed. I know it runs 64 bt as I can see it in
activity monitor. but how do I ask python?
sys.version
'2.7 (r27:82508, Jul 3 2010, 21:12:11) \n[GCC 4.0.1 (Apple Inc. build 5493)]'
--
Thanks
Vincent Davis
On Tue, Oct 19, 2010 at 3:29 PM, Philip Semanchuk phi...@semanchuk.com wrote:
On Oct 19, 2010, at 5:18 PM, Vincent Davis wrote:
How do I get the bit version of the installed python. In my case, osx
python2.7 binary installed. I know it runs 64 bt as I can see it in
activity monitor. but how
On Tue, Oct 19, 2010 at 3:55 PM, Philip Semanchuk phi...@semanchuk.com wrote:
On Oct 19, 2010, at 5:38 PM, Hexamorph wrote:
On 19.10.2010 23:18, Vincent Davis wrote:
How do I get the bit version of the installed python. In my case, osx
python2.7 binary installed. I know it runs 64 bt as I
','MED2','MED3','MED4','MED5']].isin([drugs[n]]).any(1)
Vincent Davis
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On Wed, Jul 30, 2014 at 6:28 PM, Vincent Davis vinc...@vincentdavis.net
wrote:
The real slow part seems to be
for n in drugs:
df[n] =
df[['MED1','MED2','MED3','MED4','MED5']].isin([drugs[n]]).any(1)
I was wrong, this is fast, it was selecting the columns that was slow.
using
keep_col
', 'MED2', 'MED3',
'MED4', 'MED5']
df = df[keep_col]
The real slow part seems to be
for n in drugs:
df[n] = df[['MED1','MED2','MED3','MED4','MED5']].isin([drugs[n]]).any(1)
Vincent Davis
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. Received: 2011-08-16T22:47:47.000Z. Size:
196114. Subject RE: ppt templates.
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going on?
Vincent Davis
720-301-3003
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ipython, or at least how I am
using it ipython notebook --pylab inline.
Thanks
Vincent Davis
720-301-3003
On Fri, Jun 28, 2013 at 4:04 PM, Joshua Landau
joshua.landau...@gmail.comwrote:
On 28 June 2013 15:38, Vincent Davis vinc...@vincentdavis.net wrote:
I have a list of a list of integers
I would like to parse the VIN, frame and engine numbers found on this page
(below). I don't really know any regex, I have looked a little at
pyparsing. I have some other similar numbers to. I am looking for
suggestions, which tool should I learn, how should I approach this.
These are vintage motorcycles so the VIN's are not like modern VIN's
these are frame numbers and engine number.
I don't want to parse the page, I what a function that given a VIN (frame
or engine number) returns the year the bike was made.
Vincent Davis
720-301-3003
On Thu, Dec 25, 2014 at 5:56
Tim and Ben,
Thanks for your input, I am working on it now and will come back when I
have questions.
Any comment on using pyparsing VS regex
Vincent Davis
720-301-3003
On Thu, Dec 25, 2014 at 7:18 PM, Ben Finney ben+pyt...@benfinney.id.au
wrote:
Vincent Davis vinc...@vincentdavis.net writes
return 'tp1960'
else:
return None
else:
return None
vin_test_list = ['101n', '500n', '234na', '15809NA', '25000', '32303',
'44135', '56700', '70930', '0100', 'H11512', 'D15789', 'DU101']
for vin in vin_test_list:
print(vin_to_year2(vin))
Vincent Davis
720-301
and
the 1982 model year.
Ah , I had not looked close at that yet. I found a different more
extensive site.
http://www.britishonly.com/tech/joust/techtiptriumphmf.htm
Vincent Davis
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/tech/joust/techtiptriumphmf.htm,
I could see some overlapping although I have not looked real close yet.
Vincent Davis
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Changes by Vincent Davis vinc...@vincentdavis.com:
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nosy: +Vincentdavis
___
Python tracker rep...@bugs.python.org
http://bugs.python.org/issue21360
___
___
Python-bugs
Vincent Davis added the comment:
Rather than dealing with the time delta how about getting the time twice and
checking that we are between and at least once we have the same day.
i.e.
ts1 = time()
today = self.theclass.today()
ts2 = time()
todayagain1 = self.theclass.fromtimestamp(ts1
Vincent Davis added the comment:
Looks like this is ready to be applied and closed or just closed.
--
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___
Python tracker rep...@bugs.python.org
http://bugs.python.org/issue20544
Vincent Davis added the comment:
Anything else need to be done on this patch?
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___
Python tracker rep...@bugs.python.org
http://bugs.python.org/issue18983
I need to go find my strange symbols that
are not 'utf-8' and see what happens
I was thought, that I had to open with 'rb' to use encoding?
Vincent Davis
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How does one get the date given the day of a year.
dt.datetime.now().timetuple().tm_yday
114
How would I get the Date of the 114 day of 2014?
Vincent Davis
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On Fri, Apr 24, 2015 at 8:01 AM, Ian Kelly ian.g.ke...@gmail.com wrote:
dt.date(2014, 1, 1) + dt.timedelta(114 - 1)
datetime.date(2014, 4, 24)
Thanks!
Vincent Davis
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Not sure what I was doing wrong, it seems to work now.
Vincent Davis
720-301-3003
On Sat, May 9, 2015 at 4:46 PM, Vincent Davis vinc...@vincentdavis.net
wrote:
I am reading a file with Dictreader and writing a new file. I want use the
fieldnames in the Dictwriter from the reader. See below
: 98 pass
ValueError: I/O operation on closed file.
Thanks
Vincent
Davis
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up parts of your
error messages.
I am posting from google mail (not google groups). Kindly let me know if
this email is also html.
Vincent Davis
720-301-3003
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WELLS FARGO COMPANY
WELLS FARGO COMPANYWELLS
FARGO ¢ COMPANY
994946
{'encoding': 'windows-1252', 'confidence': 0.5}
OSSOSSO¬¬O OSSOSSOO OSSOSSOO OSSOSSO¬¬O
996535
Vincent Davis
720-301
I had been reading in a file like so. (python 3)
with open(dfile, 'rb') as f:
for line in f:
line
= line.decode('utf-8', 'ignore').split(',')
How can I do accomplish decode('utf-8', 'ignore') when reading with
DictReader()
Vincent Davis
720-301-3003
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On Sat, Apr 4, 2015 at 5:51 PM, Thomas 'PointedEars' Lahn
pointede...@web.de wrote:
Do anyone have good links to python regex or other python problems for
beginners but with solution.
Please mail me.
I recently found this
https://regex101.com/#python
Vincent Davis
720-301-3003
On Wed, May 27, 2015 at 4:55 PM, Cameron Simpson c...@zip.com.au wrote:
First, test your test by hand running:
to_datetime('2015-02-29', coerce=False)
_Does_ it raise ValueError?
Well that was not expected. Thanks
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..format(name))
AssertionError: ValueError not raised.
From the docs maybe I should be using a with statement.
Vincent Davis
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That worked, Thanks!
Vincent Davis
720-301-3003
On Thu, Oct 15, 2015 at 6:11 AM, Peter Otten <__pete...@web.de> wrote:
> Oscar Benjamin wrote:
>
> > On 15 October 2015 at 09:16, Peter Otten <__pete...@web.de> wrote:
> >>
> >> def preprocess(fi
.
with open(infile,"r") as fin:
with open(outfile,"w") as fout:
writer=csv.writer(fout)
for row in csv.reader(fin):
#do stuff to the row
writer.writerow(row)
df = pandas.csv_reader(outfile)
Vincent Davis
72
to stick this into a test. doctest seemed the simplest
but maybe there is a better way.
I also tried something like:
assert exec("""print('hello word')""") == 'hello word'
Vincent Davis
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File "/Users/vincentdavis/anaconda/envs/py35/lib/python3.5/doctest.py",
line 1320, in __run
compileflags, 1), test.globs)
File "", line 1
print('hello')
^
SyntaxError: multiple statements found while compiling a single statement
Vincent Davis
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untittests
on source code from a jupyter notebook. Reading closer this seems like it
will work.
Not that I mind learning more about how doctests work ;-)
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source="print('hello world')/n", want="hello world\n")
t = doctest.DocTestRunner()
t.run(e)
Thanks
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rite
except AttributeError:
raise
try:
name = handel.name
write("# Report_file: %s\n" % name)
except AttributeError:
pass
write("\n")
Vincent Davis
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On Mon, Dec 14, 2015 at 4:53 PM, Ian Kelly wrote:
>
> Except that catching an exception just to immediately re-raise it is
> silly. This would be better:
>
> try:
> name = handle.name
> except AttributeError:
> pass
> else:
> handle.write("# Report_file: %s\n"
except AttributeError:
pass
handle.write("\n")
The specific use case I noticed this was
https://github.com/biopython/biopython/blob/master/Bio/AlignIO/EmbossIO.py#L38
Vincent Davis
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New submission from Vincent Davis:
>From the documentation pages for python 2.7 and 3.4, 3.5, 3.6 it is possible
>to select another python version in the breadcrumb at the top left of the
>page. This is not available for python 2.6, 3.2 and 3.3.
See related issue which is clos
)))[945:965]
>>> u
'ԡԢԣԤԥԦԧԨԩԪԫԬԭԮԯԱԲԳԴԵ'
Python 3.4
>>>
import unicodedata
>>>
u = ''.join(chr(i) for i in range(65536) if (unicodedata.category(chr(i))
in ('Lu', 'Ll')))[945:965]
>>> u
'ԢԣԤԥԦԧԱԲԳԴԵԶԷԸԹԺԻԼԽԾ'
As you can see they are not the same
.
'ԡԢԣԤԥԦԧԨ
h for "xy39mGWbosjY" there is one
result as of now,
which
is an archive of this tread. If you search for any given word or even the
phrase
, for example
"baby lions at play
" you get a much larger set of results
~500
. I assue there are many was to search google with
Found an example, needs a little updating but then it works (appears to) in
python 3.5.
http://coding4streetcred.com/blog/post/Asymmetric-Encryption-Revisited-(in-PyCrypto)
Vincent Davis
720-301-3003
On Wed, Nov 18, 2015 at 5:04 PM, Chris Angelico <ros...@gmail.com> wrote:
> On Th
reading the message from a local file.
Possibly using cryptography library elliptic-curve
https://cryptography.io/en/latest/hazmat/primitives/asymmetric/ec/#elliptic-curve-signature-algorithms
Surly there is an example out there?
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ncoder(n)
> backagain = decoder(short)
> nlen = len(str(n))
> print (nlen, len(short), float(len(short))/nlen)
> assert n==backagain, (n,short,b)
>
> test()
>
Vincent Davis
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My goal is to shorten a long integer into a shorter set of characters.
Below is what I have which gets me about a 45-50% reduction. Any suggestion
on how to improve upon this?
I not limited to ascii but I didn't see how going to utf8 would help.
The resulting string needs to be something I could
t and loop over it. In my case a dict
was better.
See the example here.
https://github.com/vincentdavis/USAC_data/blob/master/tools.py#L24
Vincent Davis
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example code for this on the net an am not
finding a clean example.
Thanks
Vincent Davis
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On Tue, Jan 23, 2018 at 4:15 PM Dennis Lee Bieber <wlfr...@ix.netcom.com>
wrote:
> On Tue, 23 Jan 2018 13:51:55 -0700, Vincent Davis
> <vinc...@vincentdavis.net> declaimed the following:
>
> >Looking for suggestions. I have an ordered list of names these names will
&g
Why not start with a histogram.
Vincent
On Sat, Dec 15, 2018 at 6:46 PM Marc Lucke wrote:
> hey guys,
>
> I have a hobby project that sorts my email automatically for me & I want
> to improve it. There's data science and statistical info that I'm
> missing, & I always enjoy reading about the
o keep it in that color format? I think yes.
3. How can I visualize this data as a 6x6 color image and visualize each
color on a gray scale.
4. General hints or link of how to proceed would be helpful.
Thanks
Vincent Davis
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Dennis,
Thanks for your ideas. The researcher I am working with just told me the
data is wrong and needs to send me new data and there are other problems
with exactly what their research questions is. So this goes nowhere for now.
Thanks
Vincent Davis
720-301-3003
*Want to get a hold of me
ray([8.83911760e-05, 6.31347765e-05, 3.89486842e-05, 2.13775583e-05,
2.10950231e-05, 4.10487515e-05, 6.7000e-05, 9.10878697e-05,
7.61183289e-05, 9.90050504e-05, 7.88162420e-05, 5.90931468e-05,
4.50111097e-05, 4.97393205e-05, 6.78969808e-05, 8.52115016e-05,
...
Thanks
Vincent Davis
Data Sceptic has a couple podcast and some of the code is open source.
https://dataskeptic.com/blog/episodes/2018/algorithmic-detection-of-fake-news
Thanks
Vincent Davis
720-301-3003
*Want to get a hold of me?*
*SMS: awesome.phone: ok...*
*email: bad!*
On Fri, Jul 17, 2020 at 11:39 PM Mike
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