Dear all,
I am new in python, can anyone help me that how can I select two column out of
6 column from a file.
For example if I have file like:
a1 a2 a3 a4 a5 a6
b1 b2 b3 b4 b5 b6
c1 c2 c3 c4 c5 c6
d1 d2 d3 d4 d5 d6
and I want output like:
a1 a4
b1 b4
c1 c4
d1 d4
then how to do
Thanks --
-55.3 -36.8 34.6 28.8 -8.2
and in the output I want just:
2 A I
3 A R -
4 A P H 3 S+
i.e. residue no., aa and seconday structure.
Thanks
On Mon, 26 Apr 2010 20:40:55 +0530 wrote
mannu jha wrote:
Dear all,
I am new in python, can anyone help me that how can I select two
column
Dear all,
I have a file like:
1 ALA Helix Sheet Helix Coil
2 ALA Coil Coil Coil Sheet
3 ALA Helix Sheet Coil Turn
now what I want is that write a python program in which I will put the
condition that in each line whatever secondary structure is coming more than or
equal to two times it should
Dear all,
I am trying my problem in this way:
import re
expr = re.compile(Helix Helix| Sheet Sheet| Turn Turn| Coil Coil)
f = open(CalcSecondary4.txt)
for line in f:
if expr.search(line):
print line
but with this it is printing only those line in which helix, sheet, turn and
coil
Hi,
I have few files like this:
24 ALA helix (helix_alpha, helix2)
27 ALA helix (helix_alpha, helix2)
51 ALA helix (helix_alpha, helix4)
58 ALA helix (helix_alpha, helix5)
63 ALA helix (helix_alpha, helix5)
now with this program:
for line in open('1.txt'):
columns =
], columns[1]
IndexError: list index out of range
nmru...@caf:~
Thanks,
On Thu, 06 May 2010 15:44:07 +0530 wrote
mannu jha wrote:
Hi,
I have few files like this:
24 ALA helix (helix_alpha, helix2)
27 ALA helix (helix_alpha, helix2)
51 ALA helix (helix_alpha, helix4)
58 ALA
On Fri, 07 May 2010 18:58:59 +0530 wrote
mannu jha wrote:
On Thu, 06 May 2010 18:54:59 +0530 wrote
mannu jha wrote:
I tried with this:
for line in open('1.txt'):
columns = line.split()
print columns[0], columns[1
Hi,
I have two different file
file1:
a1 a2
a3 a4
a5 a6
a7 a8
file2:
b1 b2
b3 b4
b5 b6
b7 b8
and I want to join them so the output should look like this:
a1 a2 b1 b2
a3 a4 b3 b4
a5 a6 b5 b6
a7 a8 b7 b8
how to do that?
--
http://mail.python.org/mailman/listinfo/python-list
On Sat, 15 May 2010 00:14:05 +0530 wrote
On 05/14/2010 12:55 PM, James Mills wrote:
file1:
a1 a2
a3 a4
a5 a6
a7 a8
file2:
b1 b2
b3 b4
b5 b6
b7 b8
and I want to join them so the output should look like this:
a1 a2 b1 b2
a3 a4 b3 b4
a5 a6 b5 b6
a7 a8 b7 b8
Hi,
I have few files like this:
file1:
22 110.1
33 331.5 22.7
5 271.9 17.2 33.4
4 55.1
file1 has total 4 column but some of them are missing in few row.
file2:
5 H
22 0
file3:
4 T
5 B
22 C
121 S
in all these files first column is the main source of matching their entries.
So What I want
Note: Forwarded message attached
-- Original Message --
From: mannu jhamannu_0...@rediffmail.com
To: da...@ieee.org
Subject: Re: Re: joining files---BeginMessage---
On Sun, 16 May 2010 13:52:31 +0530 wrote
mannu jha wrote:
Hi,
I have few files like this:
file1:
22 110.1
33 331.5
On Sun, 16 May 2010 23:51:10 +0530 wrote
On 05/16/2010 05:04 PM, Dave Angel wrote:
(You forgot to include the python-list in your response. So it only
went to me. Normally, you just do reply-all to the message)
mannu jha wrote:
On Sun, 16 May 2010 13:52:31 +0530 wrote
mannu jha wrote:
Hi
the python-list in your response. So it only
went to me. Normally, you just do reply-all to the message)
mannu jha wrote:
On Sun, 16 May 2010 13:52:31 +0530 wrote
mannu jha wrote:
Hi,
I have few files like this:
file1:
22 110.1 33 331.5 22.7 5 271.9 17.2 33.4
4 55.1
file1 has total 4 column
Note: Forwarded message attached
-- Original Message --
From: mannu jhamannu_0...@rediffmail.com
To: tuomas.vesteri...@iki.fi
Subject: Re: Re: joining files---BeginMessage---
import os
def merge_sources(sources):
# sources is a list of tuples (source_name, source_data)
data = []
On Mon, 17 May 2010 23:57:18 +0530 wrote
Try:
file = open(input11.txt)
file1 = file.read() # file1 is a string
file.close()
or
file1 = open(input11.txt) # file1 is an open file object
and replace lines:
for line in sce.split(os.linesep):
lst = line.split()
lines[lst[0]] =
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