I actually had a similar issue. It ended up being a BIOS that refused to
detect rc3 is ISO format. Mounting the ISO and copying the files over to
a FAT formatted USB got around the boot issue but the qubes installer
doesn't see it's root partition then.
The working solution was to insert both the FAT formatted USB and the
ISO one (just burned using DD). That way there's an EFI partition for
the UEFI to boot and a proper Qubes USB for the installer to use. Not
pretty, but it worked.
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