Oh no.. I feel the pain. I had a similar disaster, I got a 2nd ssd and installed windows on its own ssd. Physically remove qubes drive before installing windows and vise versa. I had to reinstall qubes os.. I was able to save most of my stuff by creating each qube disk image mouting to usb and then dumping the files into new qubes. What a disaster! But I cant get away from qubes, Im addicted! LoL I made it! Have fun!
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