No expert, but try:
sudo yum remove qubes-template-whonix-ws
then
sudo qubes-dom0-update --enablerepo=qubes-templates-community \
qubes-template-whonix-ws
You might have tried this but I had to do the whonix reinstall myself
Source:
https://www.qubes-os.org/doc/templates/
https://www.qubes-os.org/doc/remove-vm-manually/
https://www.qubes-os.org/doc/reinstall-template/
I hope this helps you...
V
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