[Rd] Namespace/inheritance problem in S4 methods for a union class

2013-05-07 Thread Renaud Gaujoux
Hi, I started this post on bioc-devel but this seems to be more general: https://stat.ethz.ch/pipermail/bioc-devel/2013-May/004311.html See reproducible example from Martin below. Thank you. Renaud -- Forwarded message -- From: Martin Morgan Date: 7 May 2013 19:55 Subject: Re

[Rd] Dependencies of Imports not attached?

2013-05-07 Thread Peter Meilstrup
Encountered an error in scripting, which can be reproduced using Rscript as follows: $ Rscript -e "library(httr); handle('http://cran.r-project.org')" Error in getCurlHandle(cookiefile = cookie_path, .defaults = list()) : could not find function "getClass" Calls: handle -> getCurlHandle or by

[Rd] error when calling seek() twice on a gzfile connection

2013-05-07 Thread Hervé Pagès
Hi, I get an "internal error" when calling seek() twice on a gzfile connection. Create a gzip file: bigraw <- sample(charToRaw("abcdef"), 3000, replace=TRUE) save(bigraw, file="bigraw.rda") Open it: con <- gzfile("bigraw.rda", "rb") Then: > seek(con, where=1) [1] 0 > seek(c