Dear Bioconductor Developers,
We are excited to announce openings at Genentech for several summer
internship positions in the Department of Bioinformatics and Computational
Biology. An internship at Genentech is a great way to get exposure to
scientific research in an industry setting.
For more
Hi Michael,
On 01/12/2014 05:16 AM, Michael Lawrence wrote:
Hi,
It may be time to deprecate the seq*apply family of functions, including
seqapply, mseqapply, tseqapply, seqby and seqsplit. These are ancient
functions named in referece to the Sequence class, now called Vector.
It would seem
Hi developers,
Taking advantage of this particularly calm week on Bioc-devel,
I'd like to formally announce that we're now using branches
in the svn repo for data experiment packages.
The trunk/branches layout is similar to what we already do in
the software repo. That is:
- URL for packages
On Wed, Jan 22, 2014 at 1:29 PM, Hervé Pagès hpa...@fhcrc.org wrote:
Hi Michael,
On 01/12/2014 05:16 AM, Michael Lawrence wrote:
Hi,
It may be time to deprecate the seq*apply family of functions, including
seqapply, mseqapply, tseqapply, seqby and seqsplit. These are ancient
functions
On 01/22/2014 03:02 PM, Michael Lawrence wrote:
On Wed, Jan 22, 2014 at 1:29 PM, Hervé Pagès hpa...@fhcrc.org
mailto:hpa...@fhcrc.org wrote:
Hi Michael,
On 01/12/2014 05:16 AM, Michael Lawrence wrote:
Hi,
It may be time to deprecate the seq*apply family of
Sounds good. But who is she?
On Wed, Jan 22, 2014 at 3:48 PM, Hervé Pagès hpa...@fhcrc.org wrote:
On 01/22/2014 03:02 PM, Michael Lawrence wrote:
On Wed, Jan 22, 2014 at 1:29 PM, Hervé Pagès hpa...@fhcrc.org
mailto:hpa...@fhcrc.org wrote:
Hi Michael,
On 01/12/2014 05:16 AM,
On 01/22/2014 08:15 PM, Michael Lawrence wrote:
Sounds good. But who is she?
we would, she should, she would, we should... that's it! we should...
that's what I meant :-b
H.
On Wed, Jan 22, 2014 at 3:48 PM, Hervé Pagès hpa...@fhcrc.org
mailto:hpa...@fhcrc.org wrote:
On 01/22/2014
Hello,
The documentation says :
maxroundNumber of iterations. The default value is 5.
However, if I call the EBTest function without specifying maxround, it has an
error :
Error in 1:maxround : 'maxround' is missing
--
Dario Strbenac
PhD Student
Hello,
In the documentation, it is described as :
C1MeanThe mean of each transcript within Condition 1 (adjusted by
normalization factors).
C2MeanThe mean of each transcript within Condition 2 (adjusted by
normalization factors).
However, when I look at it :
Dear all,
in my package 'stochvol' I have unsuccessfully been trying to make a C
routine called 'sampler' available to be called from other packages' C code.
Following
http://cran.r-project.org/doc/manuals/R-exts.html#Linking-to-native-routines-in-other-packages
I have included
#include
Hi Gregor,
On 22 January 2014 at 11:53, Gregor Kastner wrote:
| in my package 'stochvol' I have unsuccessfully been trying to make a C
| routine called 'sampler' available to be called from other packages' C code.
|
| Following
|
I pride myself on having an extensive and comprehensive test suite for the
survival package.
However, I don't have a good procedure for testing the plotting routines. (Forget good,
I don't even have a third-rate procedure for this.) This was brought home with the latest
release; within 24
On 22/01/2014 14:35, Therneau, Terry M., Ph.D. wrote:
I pride myself on having an extensive and comprehensive test suite for
the survival package.
However, I don't have a good procedure for testing the plotting
routines. (Forget good, I don't even have a third-rate procedure for
this.) This
Hi,
Winston Chang designed the vtest package for a similar purpose,
https://github.com/wch/ggplot2/wiki/Visual-test-system
https://github.com/wch/vtest
I don't know if / how well it works outside the ggplot2 framework, but it's
pretty slick.
HTH,
baptiste
On 22 January 2014 11:35,
Hello,
I'm writing a script that automates the testing of reverse dependencies of a
package. I found the function testInstalledPackage in the tools package, which
seems to do what I want. However, when I use it for a source package that was
installed with --install-tests, I've noticed that
Hi again,
On Wed, 22 Jan 2014 06:39:17 -0600
Dirk Eddelbuettel e...@debian.org wrote:
| Working examples I know of:
|
|'xts' importing two functions from 'zoo'
|
|'RcppXts' importing approx. ten functions from 'xts'
|
| Maybe by comparing to these you can sort out the missing step
Hello,
The problem is that you have logic in both your mother and child packages. IMO,
you should only have logic in the mother package.
I’ve done this in a number of packages, it requires a bit of work initially,
but not that much.
What I’d do is have something like this in
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Hi
I would like to create a Namespace during runtime, and not during
loading a package.
My reasoning is that I want to be able to store a number of variables
and to protect them from the user (might be even myself). The code
will not be in a
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