Hi Herve,
I reinstalled AnnotationDbi 1.25.17, and now things work flawlessly.
Thank you for your help!
Michael
On 09.04.2014 19:25, Hervé Pagès wrote:
Hi Michael,
Because of a recent change to IRanges, some information about the
as.list method table is now out-of-sync in your installed
seems like something we should use more routinely, and it was not
straightforward for me to find it in IRanges
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- Original Message -
From: Gustavo H. Esteves geste...@gmail.com
To: BioC Devel - List bioc-de...@stat.math.ethz.ch
Sent: Thursday, April 10, 2014 8:08:29 AM
Subject: [Bioc-devel] Old version of packages
Dear Bioc-devel members
is it possible to recover an old version of any
In Bioconductor, the core infrastructure for loading and representing
flow cytometry data is the flowCore package. It contains some very
useful structures, most notably the flowFrame and flowSet classes, as
well as read.FCS, which loads the (somewhat complicated, binary) FCS
file format.
However,
On 10 April 2014 14:26, Dan Tenenbaum dtene...@fhcrc.org wrote:
Hi Kieran,
- Original Message -
From: Kieran O'Neill kone...@bccrc.ca
To: bioc-devel@r-project.org
Sent: Thursday, April 10, 2014 2:03:41 PM
Subject: [Bioc-devel] Dependency on windowing systems in the flowCore
Hi all,
seqlevelsStyle- method does work for me in devel-branch, I haven't dig
into it yet, please check out the code below and its output.
## for you to paste
library(GenomicRanges)
gr - GRanges(chr1, IRanges(1, 3))
seqlevelsStyle(gr) ## works
seqlevelsStyle(gr) - NCBI ## fail
seqnameStyle(gr)
forget to say thank you in the end :)
On Thu, Apr 10, 2014 at 6:22 PM, Tengfei Yin tengfei@sbgenomics.comwrote:
Hi all,
seqlevelsStyle- method does work for me in devel-branch, I haven't dig
into it yet, please check out the code below and its output.
## for you to paste
Hi Laurent,
On 04/09/2014 12:36 PM, Laurent Gatto wrote:
Dear all,
What are your thoughts about adding a new generic to BiocGenerics:
setGeneric(compare, function(x, y, ...) setGeneric(compare))
I have spotted a couple of existing cases on CRAN (lava (S3) and NMF
(S4) with signature
On 03/26/2014 06:46 PM, Paul Gilbert wrote:
On 03/26/2014 04:58 AM, Kirill Müller wrote:
Dear list
It is possible to store expected output for tests and examples. From the
manual: If tests has a subdirectory Examples containing a file
pkg-Ex.Rout.save, this is compared to the output file
R version 3.1.0 beta (2014-03-28 r65330) -- Spring Dance
When running R CMD check mypackage.
the check fails with :
! LaTeX Error: File `zi4.sty' not found.
a search for this error forwards to similar errors but with an
inconsolata.sty file.
--
Witold Eryk Wolski
On 10 April 2014 at 10:16, Witold E Wolski wrote:
| R version 3.1.0 beta (2014-03-28 r65330) -- Spring Dance
|
| When running R CMD check mypackage.
|
| the check fails with :
|
| ! LaTeX Error: File `zi4.sty' not found.
You failed to state which OS you're on, so barring contradictory
On 2 December 2013 at 07:04, Dirk Eddelbuettel wrote:
|
| Following up on the thread spawned a while back, I just wanted to say that I
| appreciate today's RSS serving of R-devel NEWS:
|
|CHANGES IN R-devel PACKAGE INSTALLATION
|
|There is _experimental_ support for compiling C++11
On Thu, 2014-04-10 at 07:22 -0500, Dirk Eddelbuettel wrote:
On 2 December 2013 at 07:04, Dirk Eddelbuettel wrote:
|
| Following up on the thread spawned a while back, I just wanted to say that I
| appreciate today's RSS serving of R-devel NEWS:
|
|CHANGES IN R-devel PACKAGE
On Tue, Oct 29, 2013 at 1:58 AM, rom...@r-enthusiasts.com wrote:
Le 2013-10-29 03:01, Whit Armstrong a écrit :
I would love to see optional c++0x support added for R.
c++0x was the name given for when this was in development. Now c++11 is a
published standard backed by implementations by
On Thu, 2014-04-10 at 11:14 -0400, Gabor Grothendieck wrote:
On Tue, Oct 29, 2013 at 1:58 AM, rom...@r-enthusiasts.com wrote:
Le 2013-10-29 03:01, Whit Armstrong a écrit :
I would love to see optional c++0x support added for R.
c++0x was the name given for when this was in
Le 10 avr. 2014 à 17:58, Martyn Plummer plumm...@iarc.fr a écrit :
On Thu, 2014-04-10 at 11:14 -0400, Gabor Grothendieck wrote:
On Tue, Oct 29, 2013 at 1:58 AM, rom...@r-enthusiasts.com wrote:
Le 2013-10-29 03:01, Whit Armstrong a écrit :
I would love to see optional c++0x support added
On 10 April 2014 at 15:58, Martyn Plummer wrote:
| The R configure script is permissive and will enable C++11 support if
| your compiler accepts -std=c++0x. Obviously you will only get partial
| support for the C++11 standard (But this is also true of some compilers
| that accept -std=c++11). You
Suppose I generate an integer vector with e.g.
SEXP iv = PROTECT(allocVector(INTSXP, 100));
and later want to shrink the object, e.g.
shrink(iv, 50);
would simply re-set the length to 50, and allow R to reclaim the
memory that was previously used.
Is it possible to do this while
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