I'm trying to submit a new package. I have set the version number to 0.99.0 as
indicated at http://www.bioconductor.org/developers/package-submission/ .
However, I get a warning from BiocCheck that says:
* Checking new package version number...
* RECOMMENDED: y of x.y.z version should
Hi Dan,
- Original Message -
From: Dan Gatti dan.ga...@jax.org
To: bioc-devel@r-project.org
Sent: Friday, April 18, 2014 9:32:12 AM
Subject: [Bioc-devel] New package version and BiocCheck
I'm trying to submit a new package. I have set the version number to
0.99.0 as indicated at
Thanks, Martin!
Yes, it was '%in%' method that failed.
I guess it is not a good idea to define the 'duplicated S4 class ' in
these two closely related packages anyway.
So we decided to move 'curv1Filter' and 'curv2Filter' from 'flowCore'
to 'flowStats' instead(leaving 'norm2Filter' untouched).
In versions of R prior to 3.0, by default .C and .Call would find the
requested C function regardless of which shared library it was located
in. You could use the PACKAGE argument to restrict the search to a
specific library, but doing so was not necessary for it to work.
R 3.0 introduced a
- Original Message -
From: Gábor Csárdi csardi.ga...@gmail.com
To: Simon Urbanek simon.urba...@r-project.org
Cc: r-devel@r-project.org
Sent: Thursday, April 17, 2014 6:52:33 PM
Subject: Re: [Rd] R-3.1.0 OSX Snow Leopard installs old binary
On Thu, Apr 17, 2014 at 9:43 PM, Simon
Andrew,
On Apr 18, 2014, at 9:55 AM, Andrew Piskorski a...@piskorski.com wrote:
In versions of R prior to 3.0, by default .C and .Call would find the
requested C function regardless of which shared library it was located
in. You could use the PACKAGE argument to restrict the search to a
Within an R session, type Sys.getenv() will list all the environment variables,
but each one of them occupies about a page, so scrolling to find one is
difficult. Is this because I don't know how to use it or something could be
improved? Usually I'm not sure the exact name of a variable but
For your first question, try str(as.list(Sys.getenv())). I do not know
the answer for the JAGS question, and I'll leave it to someone else to
tell you which mailing list to use for such questions...
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Web: http://yihui.name
On Fri, Apr 18, 2014 at
That is a great command to have. Once the better formatted envvars with value
is listed, I noticed that JAGS-3.3.0/bin is in the PATH, so that problem is
also solved for my user.
Thanks,
Jun
-Original Message-
From: xieyi...@gmail.com [mailto:xieyi...@gmail.com] On Behalf Of Yihui Xie
I take the latter part back. I could not possibly load rjags with JAGS-3.4.0
linked.
-Original Message-
From: r-devel-boun...@r-project.org [mailto:r-devel-boun...@r-project.org] On
Behalf Of Zhang,Jun
Sent: Friday, April 18, 2014 12:03 PM
To: 'Yihui Xie'
Cc: r-devel@r-project.org
Thank you very much for your reply.
This seems better used for Windows.
Best regards,
Jun
-Original Message-
From: William Dunlap [mailto:wdun...@tibco.com]
Sent: Friday, April 18, 2014 11:50 AM
To: Zhang,Jun; r-devel@r-project.org
Subject: RE: Can the output of Sys.getenv() be
On Fri, Apr 18, 2014 at 12:38 PM, Zhang,Jun jhzh...@mdanderson.org wrote:
Within an R session, type Sys.getenv() will list all the environment
variables, but each one of them occupies about a page, so scrolling to find
one is difficult. Is this because I don't know how to use it or something
Thanks Gabor, really appreciate your help.
-Jun
-Original Message-
From: Gabor Grothendieck [mailto:ggrothendi...@gmail.com]
Sent: Friday, April 18, 2014 3:54 PM
To: Zhang,Jun
Cc: r-devel@r-project.org
Subject: Re: [Rd] Can the output of Sys.getenv() be improved?
On Fri, Apr 18, 2014
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