Hi Michael,
Thanks for the report. I'll look into this.
H.
On 04/22/2014 08:29 AM, Michael Stadler wrote:
Dear Herve,
We are hitting a 'memory not mapped' problem when using trimLRpatterns
as detailed below. I did not manage to reproduce it with few sequences,
so I have to refer to a
Hi,
See the latest software builds for BioC 2.13:
http://bioconductor.org/checkResults/2.13/bioc-20140405/
The number of packages that needed to be installed on the build
system in order to build and check the 750 BioC software packages
is displayed in the right-most column of the top table:
Hi all,
I noticed that the seqinfo works on BamFile objects, but not on
BamFileList objects. For BamFileList, it does not throw an error, but
rather uses the inherited method for List, which does not return a
useful result for BamFileList. I suggest the following implementation of
a useful
Hi Ryan --
I implemented your suggestion in Rsamtools 1.17.8; it's a little weird to come
up with such a synthetic Seqinfo, but I think the usual use case will be that
the bam files are actually identical with respect to their seqinfo. And it's
better than the previous behavior.
Thanks for
On 24/04/2014, 10:27 PM, Simon Urbanek wrote:
FWIW the link has a long thread that is 90% irrelevant - AFAICS the relevant
part is
From: Yihui Xie-2
Sep 02, 2013; 4:11pm
Re: Sweave: printing an underscore in the output from an R command
[...]
Now you are good at the regular expression level,
On 25 Apr 2014, at 14:04 , Duncan Murdoch murdoch.dun...@gmail.com wrote:
On 24/04/2014, 10:27 PM, Simon Urbanek wrote:
FWIW the link has a long thread that is 90% irrelevant - AFAICS the relevant
part is
From: Yihui Xie-2
Sep 02, 2013; 4:11pm
Re: Sweave: printing an underscore in the
(As a non-root/non-admin), I've just tried to figure out how to
prevent a default $R_HOME/site-library/ to be added to the library
path. The solution I found was to environment variable R_LIBS_SITE to
: (preferably in ~/.Renviron). Note that setting R_LIBS_SITE to en
empty string will cause it
On Thu, Apr 24, 2014 at 09:22:40PM -0400, Simon Urbanek wrote:
The bottom line is that you probably don't want to set the palette
if you don't have a device that could be used.
Ok. In my testing so far, it seems all I need is a simple little
function that does:
pdf(); nn - dev.cur(); rr -
On Windows,
1. Open the Windows Command interpreter (cmd.exe).
2. Launch rgui.exe --vanilla.
2. In RGui, (disable Misc - Buffered output) and run the following
endless loop:
i - 0; repeat { print(i - i + 1); Sys.sleep(0.1) }
[1] 1
[1] 2
[1] 3
...
3a. Back at the Windows command line, press
