Dear Florian, dear all,
I want to use Gviz::AnnotationTrack to visualize my own class. This class
overloads the [ operator. It seems that just the definition of my own [
results in a method dispatching error:
Error in callNextMethod(x, i) :
bad object found as method (class “function”)
After
I wanted something to extract @ranges from a GRanges object along with its
@seqnames, @strand, and @seqinfo. Essentially, everything but the mcols.
Does this make sense? Is there a lighter-weight way to avoid any copying
in-flight?
setMethod(granges, GRanges, function(x) {
Right, what I was wondering however is whether it's possible not to create or
modify the object at all, but rather access only the necessary bits.
It seems like a slightly different structure that puts all the location in one
place (say @granges) and the metadata in another (as it presently
Why not just do
mcols(gr) - NULL
It's way more obvious than granges(gr). And that should happen virtually
instantaneously in R 3.1, regardless of the length.
On Sun, May 4, 2014 at 3:55 PM, Tim Triche, Jr. tim.tri...@gmail.comwrote:
Right, what I was wondering however is whether it's
Hello,
I would like to install all software packages and also all annotation packages
containing the pattern Hsapiens or Mmusculus in their name. I know about
biocLite(all_group()) to do the first task, but I'm not sure if it's possible
to query the repository with a pattern. The installation
The BiocInstaller package
library(BiocInstaller)
defines appropriate repositories biocinstallRepos() that can be queried for
available packages that are named consistently with your needs
nms = row.names(available.packages(contrib.url(biocinstallRepos(
want = grep(Hsapiens|Mmusculus,
Thanks Luke!
Hadley
On Sat, May 3, 2014 at 11:48 AM, luke-tier...@uiowa.edu wrote:
Hint: Ross will be 60 this year.
luke
On Sat, 3 May 2014, Hadley Wickham wrote:
Can anyone tell me what the significance of 1954 is in R's NA?
Thanks!
Hadley
--
Luke Tierney
Chair, Statistics and
A fortune? Spencer
On 5/4/2014 6:00 AM, Hadley Wickham wrote:
Thanks Luke!
Hadley
On Sat, May 3, 2014 at 11:48 AM, luke-tier...@uiowa.edu wrote:
Hint: Ross will be 60 this year.
luke
On Sat, 3 May 2014, Hadley Wickham wrote:
Can anyone tell me what the significance of 1954 is in R's
On 03/05/2014 12:39 PM, Hadley Wickham wrote:
Can anyone tell me what the significance of 1954 is in R's NA?
Just ask R:
2*(1-pnorm(1954))
[1] 0
2*(1-pnorm(1954)) %in% NA
[1] 0
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