Hi,
https://github.com/vjcitn/biocMultiAssay/blob/master/vignettes/SEresolver.Rnw
shows some modifications to [ that allow subsetting of SE by
gene or pathway name
Without reading the code, do you intend that SE[i,j] will , if i is provided
as vector of string, will subset those rows where
On Mon, Sep 22, 2014 at 10:17 AM, Cook, Malcolm m...@stowers.org wrote:
Hi,
https://github.com/vjcitn/biocMultiAssay/blob/master/vignettes/SEresolver.Rnw
shows some modifications to [ that allow subsetting of SE by
gene or pathway name
Without reading the code, do you intend that
Hi Thomas,
Just wanted to let you know I saw this and am looking into it.
Valerie
On 09/20/2014 02:54 PM, Thomas Girke wrote:
Hi Martin, Micheal and Vincent,
If I run the following code, with the release version of BiocParallel then it
works (took me some time to actually realize that), but
On Sun, Sep 21, 2014 at 1:35 PM, Dan Tenenbaum dtene...@fhcrc.org wrote:
On September 21, 2014 1:07:29 PM PDT, Henrik Bengtsson
h...@biostat.ucsf.edu wrote:
A few questions about the Bioconductor Git-SVN bridge:
Q1. Is it safe to add, delete, add, delete, add, ... a bridge over and
over for
I have a sentence of documentation that is written as :
A list of trained models of class \code{\linkS4class{MixmodCluster}}.
However, the package Rmixmod is in Suggests. There is no [package] option for
\linkS4class, unlike for \link. What's the correct way to implement this ?
I also found a
You need to use \link[package:MyClass-class]{MyClass}.
On Mon, Sep 22, 2014 at 5:00 PM, Dario Strbenac dstr7...@uni.sydney.edu.au
wrote:
I have a sentence of documentation that is written as :
A list of trained models of class \code{\linkS4class{MixmodCluster}}.
However, the package
Hi Vince,
So if you wanted to do this manually, then the thing you would want to
do is to get a gene ID from the probe and to take that to a TranscriptDb
object (again: that is if you wanted to do it manually). Alternatively,
if you had an OrganismDb object then this association would be
I perused the source for RStudio and noticed that they had a similar
problem. I didn't think that the GEDevDesc structure was exported, but
apparently this is a worthwhile workaround to the defect.
void GD_Close(pDevDesc dev)
{
...elided...
// explicitly free and then null out the dev
I am trying to decide on a name for a directory where I will put some
extra package tests. The main motivation for this is the need to limit
the package test time on CRAN. That is, these are tests that could be in
the tests/ directory and could be run on CRAN, but will take longer than
CRAN
Hello,
I submitted a package which used Fortran functions isnan and lgamma. However, I
was told that:
isnan and lgamma are not Fortran 95 functions.
I was asked to write 'cross-platform portable code' and so should not be
writing GNU extensions to Fortran.
See
On 23-09-2014, at 00:33, Wang, Zhu zw...@connecticutchildrens.org wrote:
Hello,
I submitted a package which used Fortran functions isnan and lgamma. However,
I was told that:
isnan and lgamma are not Fortran 95 functions.
I was asked to write 'cross-platform portable code' and so
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