Dear Bioconductor members,
I'd like to draw your attention to the new package for visualisation of
oligonucleotide patterns and motif occurrences across a set of sorted
sequences.
The *seqPattern* package is now available in the development branch:
Dan,
On Jan 12, 2015, at 7:50 PM, Dan Tenenbaum dtene...@fredhutch.org wrote:
R CMD build fails with recent R-devel because it is looking for texi2dvi in
/usr/local/bin, but on this system, MacTex has installed it in /usr/bin.
No, you're looking at the wrong package - texi2dvi comes from
R CMD build fails with recent R-devel because it is looking for texi2dvi in
/usr/local/bin, but on this system, MacTex has installed it in /usr/bin.
$ R CMD build IRanges
* checking for file 'IRanges/DESCRIPTION' ... OK
* preparing 'IRanges':
* checking DESCRIPTION meta-information ... OK
*
- Original Message -
From: Duncan Murdoch murdoch.dun...@gmail.com
To: Dan Tenenbaum dtene...@fredhutch.org, Simon Urbanek
simon.urba...@r-project.org
Cc: R-devel r-devel@r-project.org
Sent: Monday, January 12, 2015 8:40:07 PM
Subject: Re: [Rd] R CMD build looking for texi2dvi in
git has an interface for cloning SVN repositories into git which
some users might decide to use. For those users' surprise, the
repository will always fail to build on svnonly target and it will
exit early.
The problem is simple enough to fix by just checking if a .git
directory exists in
On 12/01/2015 6:26 PM, Dan Tenenbaum wrote:
- Original Message -
From: Simon Urbanek simon.urba...@r-project.org
To: Dan Tenenbaum dtene...@fredhutch.org
Cc: R-devel r-devel@r-project.org
Sent: Monday, January 12, 2015 5:50:35 PM
Subject: Re: [Rd] R CMD build looking for texi2dvi
Hi all,
can anyone please explain or point me to an explanation of how to
replace org.Hs.egCHR and friends that appear to be deprecated in the
devel version? The deprecation message isn't very helpful. Thanks!
x = org.Hs.egCHR
Warning message:
In (function () :
org.Hs.egCHR is deprecated.
On Fri, Jan 9, 2015 at 12:19 PM, Duncan Murdoch
murdoch.dun...@gmail.com wrote:
On 09/01/2015 10:56 AM, Henric Winell wrote:
On 2015-01-08 02:31, Duncan Murdoch wrote:
On 07/01/2015 5:20 PM, Jeroen Ooms wrote:
On Wed, Jan 7, 2015 at 8:00 AM, Duncan Murdoch murdoch.dun...@gmail.com
wrote: