Re: [Rd] truncated warning messages

2015-04-17 Thread Jeroen Ooms
On Fri, Apr 17, 2015 at 6:05 PM, Hervé Pagès wrote: > As you can see the warning message is truncated so I can't see what > happened to these packages. In this case you could also increase options("warning.length") [[alternative HTML version deleted]] _

[Rd] truncated warning messages

2015-04-17 Thread Hervé Pagès
Hi, I was installing hundreds of packages on a machine with a single call to install.packages() and after a long time the call to install.packages() finally returned with the following warnings and errors: Warning messages: 1: packages ‘hgu133aprobe’, ‘hgu95av2.db’, ‘BSgenome.Celegans.UCSC.ce2’,

Re: [Rd] R-3.2.0 Fedora 21 heads up

2015-04-17 Thread peter dalgaard
> On 17 Apr 2015, at 21:09 , Dominick Samperi wrote: > > FYI, with R-3.2.0 the configure options --with-system-zib=yes > --with-system-bzlib=yes --with-system-pcre=yes become the default > (according to Peter Dalgaard), so the devel versions of these > libraries must be installed under Fedora to

[Rd] R-3.2.0 Fedora 21 heads up

2015-04-17 Thread Dominick Samperi
FYI, with R-3.2.0 the configure options --with-system-zib=yes --with-system-bzlib=yes --with-system-pcre=yes become the default (according to Peter Dalgaard), so the devel versions of these libraries must be installed under Fedora to prevent unresolved references. _

Re: [Rd] behavior of as.integer("5000000000")

2015-04-17 Thread Hervé Pagès
On 04/17/2015 08:24 AM, Martin Maechler wrote: Martin Maechler on Fri, 17 Apr 2015 15:49:35 +0200 writes: Hervé Pagès on Mon, 13 Apr 2015 23:36:14 -0700 writes: >> On 04/13/2015 11:32 PM, Martin Maechler wrote: >>> Hi, > as.integer("50")

Re: [Rd] behavior of as.integer("5000000000")

2015-04-17 Thread Hervé Pagès
Hi Martin, On 04/17/2015 06:49 AM, Martin Maechler wrote: Hervé Pagès on Mon, 13 Apr 2015 23:36:14 -0700 writes: > On 04/13/2015 11:32 PM, Martin Maechler wrote: >> >>> Hi, >>> > as.integer("50") >>> [1] 2147483647 >>> Warning message: >>> inacc

Re: [Rd] behavior of as.integer("5000000000")

2015-04-17 Thread Martin Maechler
> Martin Maechler > on Fri, 17 Apr 2015 15:49:35 +0200 writes: > Hervé Pagès > on Mon, 13 Apr 2015 23:36:14 -0700 writes: >> On 04/13/2015 11:32 PM, Martin Maechler wrote: >>> Hi, > as.integer("50") [1] 2147483647 Warn

Re: [Rd] Redefining {

2015-04-17 Thread William Dunlap
Redefining operators can be useful in translating R syntax to some other language. E.g., dplyr does that sort of thing to translate to sql. It puts the altered definition into an environment that is used only for such translation so it doesn't mess up other functions. > dplyr::base_scalar$`{`

Re: [Rd] Redefining {

2015-04-17 Thread William Dunlap
One could redefine the "{" function with something like `{` <- function(...) simplify2array(list(...)) but then you would have to live with the syntax it requires (semicolons for separators instead of commas) > {1; 2; 3} [1] 1 2 3 > {{11;12;13}; {21;22;23}; {31;32;33}} [,1] [,2

Re: [Rd] Redefining {

2015-04-17 Thread peter dalgaard
On 17 Apr 2015, at 06:19 , Mick Jordan wrote: > I am curious if anyone knows of R code where the "{" function is redefined in > a useful way. Or "(" for that matter. I sincerely would hope not Incidentally, I seem to recall that during the design of (new?) S, it was at some point the int

Re: [Rd] behavior of as.integer("5000000000")

2015-04-17 Thread Martin Maechler
> Hervé Pagès > on Mon, 13 Apr 2015 23:36:14 -0700 writes: > On 04/13/2015 11:32 PM, Martin Maechler wrote: >> >>> Hi, >>> > as.integer("50") >>> [1] 2147483647 >>> Warning message: >>> inaccurate integer conversion in coercion >> >>> > as