Re: [R-pkg-devel] S3 method, useMethod and <-, using Roxygen

Ok, this might be a Roxygene issue, so I would close this discussion here and file an issue at GitHub for further investigation. What I found out so far: #' @rdname set_label #' @export `set_label<-` <- function(x, attr.string = NULL, value) { UseMethod("set_label<-") } #' @rdname set_label

Re: [Bioc-devel] S4 Method of ExpressionSet Signature Not Found

Beware that load_all attaches the entire package namespace to the search path, so its effect is not consistent with actual usage of the package. I think devtools has other functionality that is more consistent with Dario's original approach, and it might work better. But it is also known to break

Re: [R-pkg-devel] S3 method, useMethod and <-, using Roxygen

Here's a minimal reprex: out <- roc_proc_text(rd_roclet(), " #' Foo `foo<-` <- function(x, y, value) { UseMethod('set_labels<-') } #' Foo `foo<-.default` <- function(x, y, value) { x } ")[[2]] cat(format(out)) That generates \usage{ \method{foo}{default}(x, y) <- value }

Re: [R-pkg-devel] S3 method, useMethod and <-, using Roxygen

> which I believe is correct, although I don't think I've ever seen such > a construct in the wild. What would be the proper way to define such methods? Eg, I want `set_label` to work like this: x <- set_label(x, "my label") and additionally, like this: set_label(x) <- "my label" How would

Re: [Rd] Changed behaviour when passing a function?

Sorry guys, I've been my stupid self again. Indeed, I had been playing around and had a FUN in my global environment. I've checked my history and what I actually did, was this: FUN <- round myfun <- function(x, FUN, ...){ FUN(x, ...) } round <- 2 myfun(0.85, FUN = round, digits=1) And then

[Rd] Best way to implement optional functions?

I'm relieved to read that this issue is becoming more visible. In my own work on optimizers, I've been finding it awkward to provide a clean solution to allowing users to run e.g., optimx, when some optimizers are not installed. Unfortunately, I've not found what I consider to be a solution with

Re: [Rd] C_LogLin (stats/loglin)

Hi Gabriel, it actually works with: z <- .Call(stats:::C_LogLin, dtab, conf, table, start, nmar, eps, iter). This helps me a great deal. I will inform myself further about SEXPs. Thank you very much, Kai Zitat von Gabriel Becker : Kai, Apologies for the double

Re: [R-pkg-devel] S3 method, useMethod and <-, using Roxygen

Ok, the "Note" is due a typo (x <- set_labels(x, values,... "values" should be "value"). But still after fixing this, the two warnings remain. Am 23.10.2015 um 10:30 schrieb Daniel Lüdecke: Hello, I don't exactly know how to name my problem, so I try to describe it. In my package (sjmisc), I

[R-pkg-devel] S3 method, useMethod and <-, using Roxygen

Hello, I don't exactly know how to name my problem, so I try to describe it. In my package (sjmisc), I have a function to set label attributes to vectors: set_labels <- function(x, labels, ...) { ... } Usage would be: x <- set_labels(x, c("lo", "high")) No I wanted to also add

Re: [Bioc-devel] S4 Method of ExpressionSet Signature Not Found

Hi Dario, side note: if you want to find a bug and load the updated package over and over again it is much easier to use use devtools::load_all()! It directly loads the updated version using the source package directory without the need to detach / recompile / reinstall. So you can e.g. do: