Re: [Bioc-devel] summarizeOverlaps provide a non existing algorithm argument to findOverlaps

2015-12-25 Thread Hervé Pagès
Hi Nico, The current version of GenomicAlignments is 1.7.8. Unfortunately the Mavericks binary that is currently available via biocLite() is lagging behind (1.7.3) so you need to install the latest GenomicAlignments from source: biocLite("GenomicAlignments", type="source") Hopefully you'll

Re: [Bioc-devel] [Rd] For integer vectors, `as(x, "numeric")` has no effect.

2015-12-25 Thread Hervé Pagès
Or maybe the "right" concept is that "numeric" is a virtual class with 3 subclasses: "complex", "double", and "integer". Anyway it's probably too late for implementing the "right" concept so it doesn't really matter. Thanks Martin for offering to fix the as(1L, "numeric") bug. Very much

Re: [Rd] [Bioc-devel] For integer vectors, `as(x, "numeric")` has no effect.

2015-12-25 Thread Hervé Pagès
Or maybe the "right" concept is that "numeric" is a virtual class with 3 subclasses: "complex", "double", and "integer". Anyway it's probably too late for implementing the "right" concept so it doesn't really matter. Thanks Martin for offering to fix the as(1L, "numeric") bug. Very much