Re: [Rd] failed to assign RegisteredNativeSymbol for splitString

2016-07-18 Thread Martin Morgan
On 07/18/2016 03:45 PM, Andrew Piskorski wrote: I saw a warning from R that I don't fully understand. Here's one way to reproduce it: $ /usr/local/pkg/R-3.2-branch-20160718/bin/R --version | head -n 3 R version 3.2.5 Patched (2016-05-05 r70929) -- "Very, Very Secure Dishes"

[Rd] memory leak in split.screen

2016-07-18 Thread Martin Schlather via R-devel
Hello, ## Configuring R with ./configure --with-tcl-config=/usr/lib/tcl8.5/tclConfig.sh --with-tk-config=/usr/lib/tk8.5/tkConfig.sh CFLAGS="-fsanitize=address -fsanitize=undefined -fno-sanitize=float-divide-by-zero,vptr " CXXFLAGS="-fsanitize=address -fsanitize=undefined

[Rd] failed to assign RegisteredNativeSymbol for splitString

2016-07-18 Thread Andrew Piskorski
I saw a warning from R that I don't fully understand. Here's one way to reproduce it: $ /usr/local/pkg/R-3.2-branch-20160718/bin/R --version | head -n 3 R version 3.2.5 Patched (2016-05-05 r70929) -- "Very, Very Secure Dishes" Copyright (C) 2016 The R Foundation for Statistical

[Bioc-devel] Submission of a revision of a package

2016-07-18 Thread Mathieu EMILY
Dear all, I first submitted my package GeneGeneInteR with the old version of the issue tracker the 25th of May. I sent a revision of my package the 17th of june, but in the meanwhile the Github submission has opened. Should I use the Github-based tracker to submit the revision of my

Re: [Rd] summary() dispatch puzzle

2016-07-18 Thread Ben Bolker
I'm not doing a good job at explaining. See inline below ... On 16-07-18 11:02 AM, Martin Maechler wrote: >> Ben Bolker >> on Fri, 15 Jul 2016 16:45:50 -0400 writes:akram > > > I'm sorry I haven't boiled this down to a more-minimal example yet, > > but

Re: [R-pkg-devel] relation between vignettes and help files

2016-07-18 Thread Martin Maechler
> Boylan, Ross > on Fri, 15 Jul 2016 17:23:37 + writes: > One issue with integrating vignettes into the help system is that vignettes are > more likely to have material (figures, math) that renders poorly or not at all as text. > I also mostly

Re: [Rd] summary() dispatch puzzle

2016-07-18 Thread Martin Maechler
> Ben Bolker > on Fri, 15 Jul 2016 16:45:50 -0400 writes: > I'm sorry I haven't boiled this down to a more-minimal example yet, > but ... > I'm working on an S3 method (tidy.merMod, in the 'broom' package). It > normally handles 'merMod' objects

Re: [Bioc-devel] package devel page not available

2016-07-18 Thread Martin Morgan
On 07/18/2016 10:10 AM, Ludwig Geistlinger wrote: Thx Martin, I've missed that. BTW: Is there a best practice for incorporating packages that are not maintained anymore? Am I supposed to copy the part of the discontinued package I am building on and include that in my package? Or am I able to

Re: [Bioc-devel] package devel page not available

2016-07-18 Thread Ludwig Geistlinger
Thx Martin, I've missed that. BTW: Is there a best practice for incorporating packages that are not maintained anymore? Am I supposed to copy the part of the discontinued package I am building on and include that in my package? Or am I able to somehow import from an archived version of the

Re: [Rd] sample() fails with double or integer NA input of length one

2016-07-18 Thread Martin Maechler
> Travis McArthur > on Sat, 16 Jul 2016 14:40:28 -0500 writes: > Hi, > I have discovered that sample() fails with an uninformative error > message when the x argument is a single NA of type double or integer. > I can reproduce the problem

[Bioc-devel] package devel page not available

2016-07-18 Thread Ludwig Geistlinger
Hi, I am trying to access the devel page of my package https://www.bioconductor.org/packages/devel/bioc/html/EnrichmentBrowser.html but I am obtaining Page Not Found The page you were looking for was not found. What is the reason for that? Thx, Ludwig -- Dr. Ludwig Geistlinger Lehr- und