Re: [Bioc-devel] BStringSet Documentation

2016-09-02 Thread Dario Strbenac
Hello, Actually, I thought that substr unintentionally worked and perhaps they should both produce an error message. Thanks for adding the functionality for strsplit, though! -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

[Rd] WISH: Export utils:::findMatches()

2016-09-02 Thread Henrik Bengtsson
WISH: I'd like make a plea for utils:::findMatches() to be exported such that anyone can do: .DollarNames.MyClass <- function(x, pattern="") { utils:::findMatches(pattern, names(x)) } The utils:::findMatches() is agile to the "fuzzy" options, cf. .DollarNames. It also doesn't erase what's

Re: [Bioc-devel] BStringSet Documentation

2016-09-02 Thread Hervé Pagès
Hi, On 09/01/2016 12:00 AM, Dario Strbenac wrote: Good day, According to the documentation, I wouldn't think that substr or strsplit would work on a BStringSet, but substr does. IDs A BStringSet instance of length 5 width seq [1]61 D00626:168:C9CWMANXX:1:1105:1816:1998

Re: [Rd] withAutoprint({ .... }) ?

2016-09-02 Thread luke-tierney
On Fri, 2 Sep 2016, Kirill Müller wrote: On 02.09.2016 14:38, Duncan Murdoch wrote: On 02/09/2016 7:56 AM, Martin Maechler wrote: On R-help, with subject '[R] source() does not include added code' Joshua Ulrich on Wed, 31 Aug 2016 10:35:01 -0500 writes:

[Rd] Coercion of 'exclude' in function 'factor' (was 'droplevels' inappropriate change)

2016-09-02 Thread Suharto Anggono Suharto Anggono via R-devel
I am basically fine with the change. How about using just the following? if(!is.character(exclude)) exclude <- as.vector(exclude, typeof(x)) # may result in NA x <- as.character(x) It looks simpler and is, more or less, equivalent. In factor.Rd, in description of argument

[R-pkg-devel] multiple bibentry()s in CITATION

2016-09-02 Thread Fox, John
Dear list members, I've noticed that citation(package="pkg") generates both a text citation and a BiBTeX entry when the CITATION file contains a single call to bibentry() or citEntry(), but that only text citations are shown if there are multiple calls to bibentry() or citEntry(). Is this

Re: [Rd] withAutoprint({ .... }) ?

2016-09-02 Thread William Dunlap via R-devel
Re withAutoprint(), Splus's source() function could take a expression (literal or not) in place of a file name or text so it could support withAutoprint-like functionality in its GUI. E.g., > source(auto.print=TRUE, exprs.literal= { x <- 3:7 ; sum(x) ; y <- log(x) ; x - 100}, prompt="--> ") -->

Re: [Rd] CRAN packages maintained by you

2016-09-02 Thread Thomas Petzoldt
Am 02.09.2016 um 16:02 schrieb Dirk Eddelbuettel: On 2 September 2016 at 14:54, Thomas Petzoldt wrote: | Hi, | | I have the same problem and, at a first look, the issues reported by the | CRAN checks seemed easy to fix. However, after checking it again locally | and on

Re: [Rd] withAutoprint({ .... }) ?

2016-09-02 Thread Kirill Müller
On 02.09.2016 14:38, Duncan Murdoch wrote: On 02/09/2016 7:56 AM, Martin Maechler wrote: On R-help, with subject '[R] source() does not include added code' Joshua Ulrich on Wed, 31 Aug 2016 10:35:01 -0500 writes: > I have quantstrat installed and it

Re: [Rd] CRAN packages maintained by you

2016-09-02 Thread Dirk Eddelbuettel
On 2 September 2016 at 14:54, Thomas Petzoldt wrote: | Hi, | | I have the same problem and, at a first look, the issues reported by the | CRAN checks seemed easy to fix. However, after checking it again locally | and on http://win-builder.r-project.org it appeared that GCC 4.9.3 | (Windows,

Re: [Rd] CRAN packages maintained by you

2016-09-02 Thread Thomas Petzoldt
Hi, I have the same problem and, at a first look, the issues reported by the CRAN checks seemed easy to fix. However, after checking it again locally and on http://win-builder.r-project.org it appeared that GCC 4.9.3 (Windows, Rtools 3.4), same also on win-builder reports even more issues,

Re: [Rd] withAutoprint({ .... }) ?

2016-09-02 Thread Duncan Murdoch
On 02/09/2016 7:56 AM, Martin Maechler wrote: On R-help, with subject '[R] source() does not include added code' Joshua Ulrich on Wed, 31 Aug 2016 10:35:01 -0500 writes: > I have quantstrat installed and it works fine for me. If you're > asking why

[Rd] withAutoprint({ .... }) ?

2016-09-02 Thread Martin Maechler
On R-help, with subject '[R] source() does not include added code' > Joshua Ulrich > on Wed, 31 Aug 2016 10:35:01 -0500 writes: > I have quantstrat installed and it works fine for me. If you're > asking why the output of t(tradeStats('macross'))

Re: [Bioc-devel] git mirror fails

2016-09-02 Thread Martin Morgan
I'll inline an off-list exchange below, so that others with similar questions may benefit. On 09/01/2016 08:09 AM, Martin Morgan wrote: On 08/31/2016 05:23 PM, Lara Urban wrote: Dear All, I hope this is the right platform to post my question: I am currently trying to update my package on