[Bioc-devel] svn and git-mirror not synced

Hi, It seems like the svn/Bioconductor version and the git-mirrors are out of sync, for the piano package. Bioconductor and svn show 1.15.2: http://bioconductor.org/packages/devel/bioc/html/piano.html Git-mirror, DESCRIPTION shows version 1.15.1:

Re: [Rd] ifelse() woes ... can we agree on a ifelse2() ?

Well, that's embarrassing. Sorry for the noise on that front, everyone. I misunderstood something from the aforementioned unrelated conversation I was having, but not double checking is on me (I rarely use if else and when I do I avoid that situation in my own code, which is why I didn't already

[R-pkg-devel] Conflicting S3 imports?

Dear all, When building my package "A" I get following warning. class "inla" is defined (with package slot ‘B’) but no metadata object found to revise superClass information---not exported? Making a copy in package ‘A’ - Both packages "A" and "B" use setOldClass("inla") to import the S3 class

Re: [Rd] ifelse() woes ... can we agree on a ifelse2() ?

> Suharto Anggono Suharto Anggono via R-devel > on Sat, 26 Nov 2016 17:14:01 + writes: > Just stating, in 'ifelse', 'test' is not recycled. As I said in "R-intro: length of 'ifelse' result"

[Rd] Two typos in manuals

I think that in doc/manual/R-intro.texi, "used a part of an even larger expression" should be "used as part of an even larger expression". Another suspected typo is in doc/manual/R-ints.texi, where "dialects of TeX and used for different purposes" should probably be "dialects of TeX are used

[Rd] Strange behavior when using progress bar (Fwd: Re: [R] The code itself disappears after starting to execute the for loop)

I first answered to the email below in r-help, but as I did not see any response, and it looks like a bug/unwanted behavior, I am also posting here. I have observed this in RGui, whereas it seems not to happen in RStudio. Similar to OP, I sometimes have a problem with functions using the

Re: [Rd] ifelse() woes ... can we agree on a ifelse2() ?

> Related to the length of 'ifelse' result, I want to say that "example of > different return modes" in ?ifelse led me to perceive a wrong thing in the > past. > ## example of different return modes: > yes <- 1:3 > no <- pi^(0:3) > typeof(ifelse(NA,yes, no)) # logical >

Re: [Rd] Missing objects using dump.frames for post-mortem debugging of crashed batch jobs. Bug or gap in documentation?

Martin, thanks for the good news and sorry for wasting your (and others time) by not doing my homework and query bugzilla first (lesson learned! ). I have tested the new implementation from R-devel and observe a semantic difference when playing with the parameters: # Test script 1 g <-

[Rd] methods:::.selectSuperClasses and byte compilation

Dear R-devel list, Running the following example on a recent R-devel (here, 2016-11-22 r71672) shows that the byte compiler can cause some significant performance drops (here, computation time increasing from 0.01s to 0.31s ...) = library(Matrix) someMatrix <-