Re: [Bioc-devel] [Bioc-degel] AnnotationHub needed in the description of the ExperimentHubData

Yes, changes are in ExperimentHubData 1.1.4 and ExperimentHub 1.1.2 as stated below. The change was made after the builds picked up yesterday so the new version should propagate to the landing page tomorrow (Wed Dec 7) or you can get them immediately from svn with svn co

Re: [Bioc-devel] download stats

Hi Antonio, Because of some ssh key issues the script that generates the stats was not able to retrieve the HTTP log files for the last 2-3 weeks. The problem is fixed now and the stats for November look really good :-) https://bioconductor.org/packages/stats/bioc/ Cheers, H. On 11/29/2016

Re: [Bioc-devel] [Bioc-degel] AnnotationHub needed in the description of the ExperimentHubData

Hi Valerie, Thanks for looking around. Have you provided this changes to the vignette? In https://bioconductor.org/packages/devel/bioc/vignettes/ExperimentHubData/inst/doc/ExperimentHubData.html#bug-fixes devel there looks to be a code appearance issue in chapter 2.2 Building the software package

Re: [Rd] segfault with POSIXlt zone=NULL zone=""

Thanks for the reply, Duncan. It looks like Martin can commit a patch faster than I can open a bug report... Frederick On Tue, Dec 06, 2016 at 12:39:32PM -0500, Duncan Murdoch wrote: > I agree this is a bug; R should never segfault. I wouldn't call it a high > priority one, since you can avoid

Re: [Rd] unlist strips date class

On 12/05/2016 01:05 AM, peter dalgaard wrote: On 02 Dec 2016, at 23:13 , Hervé Pagès wrote: More generally one might reasonably expect 'unlist(x)' to be equivalent to 'do.call(c, x)' on a list 'x' where all the list elements are atomic vectors: Well, both are generic,

Re: [Rd] segfault with POSIXlt zone=NULL zone=""

> Joshua Ulrich > on Tue, 6 Dec 2016 09:51:16 -0600 writes: > On Tue, Dec 6, 2016 at 6:37 AM, wrote: >> Hi all, >> >> I ran into a segfault while playing with dates. >> >> $ R --no-init-file >> ... >> >

Re: [Rd] ok to segfault with POSIXlt zone=NULL zone=""?

I got a similar result from R-Studio 1.0.44 with > sessionInfo() R version 3.3.2 (2016-10-31) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X El Capitan 10.11.6 locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats

Re: [Rd] ok to segfault with POSIXlt zone=NULL zone=""?

I agree this is a bug; R should never segfault. I wouldn't call it a high priority one, since you can avoid the problem by not messing with R's internal structures. It's unlikely to get fixed unless someone posts it as a bug report to bugs.r-project.org (because low priority bugs reported

[Rd] ok to segfault with POSIXlt zone=NULL zone=""?

Hi all, Here's a more minimal version of my earlier bug report (thanks, Joshua Ulrich): d=as.POSIXlt(Sys.time()); d$zone=NULL; d$zone=""; d I got some helpful, if glib, feedback from Joshua that the segfault may be caused by the changing of the order of the list elements in 'd' (representing

Re: [Rd] segfault with POSIXlt zone=NULL zone=""

On Tue, Dec 6, 2016 at 10:30 AM, wrote: > Hi Joshua, > > Thank you for minimizing my test case. > >> > Hope I'm not doing something illegal... >> > >> You are. You're changing the internal structure of a POSIXlt object >> by re-ordering the list elements. You should not

Re: [Rd] Spam messages

Hi, FWIW, I checked the R-Devel subscriber list of e-mail addresses (as Co-Admin with Martin I have access). There are presently 1,296 subscribers to individual posts and 746 to post digests on R-Devel. Neither of the two e-mail addresses referenced below as being the sources of spam are

Re: [Rd] segfault with POSIXlt zone=NULL zone=""

Hi Joshua, Thank you for minimizing my test case. > > Hope I'm not doing something illegal... > > > You are. You're changing the internal structure of a POSIXlt object > by re-ordering the list elements. You should not expect a malformed > POSIXlt object to behave as if it's correctly formed.

Re: [Rd] Spam messages

I agree that no action should be taken. It's somewhat mystifying that the robot known as "Amy Kristen" responds so quickly after my post, and with such regularity (so far twice per hour), using perhaps several email addresses - and using the correct "Reply-To" headers. But more mystifying is that

Re: [Rd] Spam messages

Hi, This topic has come up previously, across the R e-mail lists and the spammers need not be subscribers (but could be), but simply reasonably competent HTML scrapers. If you look at the online archives of the R lists, for example R-Devel for this month:

Re: [Rd] segfault with POSIXlt zone=NULL zone=""

On Tue, Dec 6, 2016 at 6:37 AM, wrote: > Hi all, > > I ran into a segfault while playing with dates. > > $ R --no-init-file > ... > > library(lubridate); d=as.POSIXlt(floor_date(Sys.time(),"year")); > d$zone=NULL; d$zone=""; d > If you're asking about a bug in R,

Re: [Rd] Spam messages

Perhpas amy needs help with her new package, R_spam,which is not working well with R_scam.  Em 6 de dez de 2016 11:16, escreveu: Yes, I just heard from Amy Kristen who is "looking to meet new guys"... On Fri, Dec 02, 2016 at 11:31:56AM -0800, Kenny Bell wrote: > Have others

Re: [Rd] Spam messages

The problem is not specific to this list. Any kind of public list may mean that other subscribers (or even the whole world) can see your email address. So whenever you mail to a (public) list there is a good chance that afterwards, you will get more spam. Not really much can be done about it, at

Re: [Rd] Spam messages

> new package, R_spam Oh, you got my hopes up! On Tue, Dec 06, 2016 at 12:24:20PM -0200, Marcelo Perlin wrote: > Perhpas amy needs help with her new package, R_spam,which is not working > well with R_scam.  > > Em 6 de dez de 2016 11:16, escreveu: > > Yes, I just heard

Re: [Rd] Spam messages

Yes, I just heard from Amy Kristen who is "looking to meet new guys"... On Fri, Dec 02, 2016 at 11:31:56AM -0800, Kenny Bell wrote: > Have others received spam messages after posting to this list? > > The two problem emails are hodgesdonna...@yahoo.com and > amykristen4...@octbm.com. > >

[Rd] segfault with POSIXlt zone=NULL zone=""

Hi all, I ran into a segfault while playing with dates. $ R --no-init-file ... > library(lubridate); d=as.POSIXlt(floor_date(Sys.time(),"year")); d$zone=NULL; d$zone=""; d Attaching package: ‘lubridate’ The following object is masked from ‘package:base’: date