Re: [Bioc-devel] GAlignments Sorting Causes C Stack Error

Hi, No ordering was defined until now for GAlignments. Starting with GAlignments 1.11.7, the elements of a GAlignments object 'x' are ordered based on the order of the elements in 'granges(x)', that is, by chromosome, then by strand, then by start, then by end. Note that I chose a simple

Re: [Rd] problem with print.generic(x)deparse(substitute(x))

On 2017-01-09 8:19 AM, Spencer Graves wrote: Hi, Peter et al.: On 2017-01-09 4:24 AM, peter dalgaard wrote: On 09 Jan 2017, at 10:53 , Spencer Graves wrote: # Define an object of class 'dum' k <- 1 class(k) <- 'dum' str(k) # as expected # Define print.dum

Re: [Rd] problem with print.generic(x)deparse(substitute(x))

Hi, Peter et al.: On 2017-01-09 4:24 AM, peter dalgaard wrote: On 09 Jan 2017, at 10:53 , Spencer Graves wrote: # Define an object of class 'dum' k <- 1 class(k) <- 'dum' str(k) # as expected # Define print.dum print.dum <- function(x, ...)

Re: [Rd] problem with print.generic(x)deparse(substitute(x))

On 09 Jan 2017, at 10:53 , Spencer Graves wrote: > # Define an object of class 'dum' > k <- 1 > class(k) <- 'dum' > str(k) # as expected > > # Define print.dum > print.dum <- function(x, ...) > deparse(substitute(x)) > > print(k) # Prints "k" as expected >

[Rd] problem with print.generic(x)deparse(substitute(x))

Hi, All: I'm having trouble getting deparse(substitute(x)) inside print.generic to consistently I'm having trouble getting a print.something to work consistently. Consider the following toy example: # Define an object of class 'dum' k <- 1 class(k) <- 'dum' str(k) # as