Re: [R-pkg-devel] Warning of DDRTree

On 14 April 2017 at 01:49, Xiaojie Qiu wrote: | We are planning to update the DDRTree package but found the following | warnings: | | d:/RCompile/CRANpkg/lib/3.4/BH/include/boost/unordered/detail/buckets.hpp:586:29: | warning: ISO C++ 1998 does not support 'long long' [-Wlong-long] |

Re: [R-pkg-devel] Warning of DDRTree

You can try placing this in your src/Makevars[.win] file: CXXFLAGS = -DBOOST_NO_LONG_LONG The dplyr package does this (and more) to avoid 'long long' leaking in from Boost headers. See e.g. https://github.com/tidyverse/dplyr/blob/ff719f53f88f2f03a298fa0ea489b902527ee2f1/src/Makevars#L2 The

[R-pkg-devel] Warning of DDRTree

We are planning to update the DDRTree package but found the following warnings: d:/RCompile/CRANpkg/lib/3.4/BH/include/boost/unordered/detail/buckets.hpp:586:29: warning: ISO C++ 1998 does not support 'long long' [-Wlong-long]

Re: [R-pkg-devel] Package Submission: issues with R_registerRoutines', 'R_useDynamicSymbols'

On Thu, Apr 13, 2017 at 10:14 AM, Vineetha Warriyar Kodalore Vijayan < vineethawarriyar@ucalgary.ca> wrote: > Can someone help to resolve this issue? I wrote a short R script that will read your RcppExports.cpp and emit the corresponding init.c file. I call it from my configure script, but

Re: [R-pkg-devel] Package Submission: issues with R_registerRoutines', 'R_useDynamicSymbols'

Thanks everyone! -Vineetha From: Ege Rubak Sent: Thursday, April 13, 2017 11:04:20 AM To: Zhian Kamvar; Vineetha Warriyar Kodalore Vijayan Cc: r-package-devel@r-project.org Subject: Re: [R-pkg-devel] Package Submission: issues with

Re: [R-pkg-devel] Package Submission: issues with R_registerRoutines', 'R_useDynamicSymbols'

Hi Ege, Thank you! In the init.c file, do I have to change 'void' to corresponding declaration? E.g: extern void F77_NAME(datacon)(void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *); Also, how do I know the package passes the CRAN incoming feasibility

[R-pkg-devel] Package Submission: issues with R_registerRoutines', 'R_useDynamicSymbols'

Hi, When I submitted my R package to CRAN, it didn't go through the automatic incoming check, resulting the following NOTE. I tested on my macOS with R CMD CHECK and R CMD --as-cran, both went through with one NOTE ( Maintainer: NOTE). * checking compiled code ... NOTE File

Re: [Rd] "table(droplevels(aq)$Month)" in manual page of droplevels

> Rui Barradas > on Wed, 12 Apr 2017 17:07:45 +0100 writes: > Hello, Inline. > Em 12-04-2017 16:40, Henric Winell escreveu: >> (Let's keep the discussion on-list -- I've added back >> R-devel.) >> >> On 2017-04-12 16:39, Ulrich Windl

Re: [Bioc-devel] R CMD check error on shinytest package

Hi Sam, Yes, this is a problem. Packages you depend on must be in a CRAN or Bioconductor repository. Valerie On 04/12/2017 10:33 PM, Samuel Wieczorek wrote: > Hi > > For the Prostar package, I began to use the funtionnalities of shinytest > wich is a package that provides utilities to

Re: [Bioc-devel] Commiting from git to svn

Dear Stephanie, Maybe I didn't pick the right commit but it didn't solve my error, and the same message appeared. Thanks for the suggestion. Lluís On 6 April 2017 at 18:34, Stephanie M. Gogarten wrote: > Try following the steps under "Dealing with prior history /

[Rd] Q: Windows/readline: missing history search

Hello! Ever since I used R on Windows (RGui) I am missing the ability to search the command history (Cntrl+R (reverse-search-history) in BASH, for example). Is there a particular reason for having this function disabled? Another feature would be word-wise delete (kill-word,

Re: [Bioc-devel] Iterating over BSgenomeViews returns DNAString instead of BSgenomeViews

You could eventually point your student to MaskedXString and oligonucleotideFrequency(). You can mask the repeats and then just run the latter to count the N-mers. Comparing their original code to the code based on existing high-level utilities might be a useful exercise. Michael On Wed, Apr