Re: [R-pkg-devel] unusually slow tests on win-builder

2017-06-05 Thread Jonathon Love
So your windows installation of R-3.4.0 can solve this in 600ms? Or is yoiur another OS? ah, yes, another OS. it turns out on windows this takes 6 seconds. the issue is that we only load imports on demand (not in our NAMESPACE), there's a behemoth dependency chain that that analysis

[Rd] surprisingly, S4 classes with a "dim" or "dimnames" slot are final (in the Java sense)

2017-06-05 Thread Hervé Pagès
Hi, It's nice to be able to define S4 classes with slots that correspond to standard attributes: setClass("A1", slots=c(names="character")) setClass("A2", slots=c(dim="integer")) setClass("A3", slots=c(dimnames="list")) By doing this, one gets a few methods for free: a1 <- new("A1",

[Bioc-devel] Minor doc change about update_remotes.sh

2017-06-05 Thread Leonardo Collado Torres
Hi, I used today http://bioconductor.org/developers/how-to/git-mirrors/ for updating https://github.com/jtleek/sva-devel and I was getting weird results when running the update_remotes.sh script https://raw.githubusercontent.com/Bioconductor/mirror/master/update_remotes.sh. It wasn't until I

Re: [Bioc-devel] ExperimentHub broken in bioc-devel?

2017-06-05 Thread Shepherd, Lori
It should be up in bioc-devel soon. It failed to build last night do to other package dependencies failing. All should be remedied by tomorrows build. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets

[Rd] Usage of PROTECT_WITH_INDEX in R-exts

2017-06-05 Thread Kirill Müller
Hi I've noted a minor inconsistency in the documentation: Current R-exts reads s = PROTECT_WITH_INDEX(eval(OS->R_fcall, OS->R_env), ); but I believe it has to be PROTECT_WITH_INDEX(s = eval(OS->R_fcall, OS->R_env), ); because PROTECT_WITH_INDEX() returns void. Best regards Kirill