Re: [Rd] configure.ac

2017-08-01 Thread Ramón Fallon
Many thanks Peter for your answer. That page was exactly what I was looking for. I suppose I was in too much of a hurry. I didn't developer links on the page R page and quick google didn't give me anything. That's great, thanks! On Tue, Aug 1, 2017 at 4:29 PM, Ramón Fallon

Re: [Rd] reproducible segmentation fault installing packages on FreeBSD 11.1

2017-08-01 Thread Joseph Mingrone
For anyone interested, here is the FreeBSD bug report. https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=221127 signature.asc Description: PGP signature __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] reproducible segmentation fault installing packages on FreeBSD 11.1

2017-08-01 Thread Joseph Mingrone
Dirk Eddelbuettel writes: > On 31 July 2017 at 19:38, Joseph Mingrone wrote: > | This happens when attempting to install any package. There were no such > | problems on 11.0. > | > | Some other ways to trigger the problem: > [...] > | trying URL

Re: [Rd] translateChar in NewName in bind.c

2017-08-01 Thread Suharto Anggono Suharto Anggono via R-devel
For the 2nd example, I say that R 3.4.1 result is acceptable, as names(c(x)) and names(x) are equal. The change exposed by the 2nd example is in line with statement of the NEWS item corresponding to PR#17284: "c() and unlist() are now more efficient in constructing the names(.) of their return

Re: [Rd] configure.ac

2017-08-01 Thread Prof Brian Ripley
On 01/08/2017 17:26, peter dalgaard wrote: If you check developer.r-project.org, you'll find links to the scripts that we use for building releases and pre-releases of R. These are usually run on a Mac, but shouldn't require much change for Linux. In particular, notice this lead-in in the

Re: [Rd] configure.ac

2017-08-01 Thread peter dalgaard
If you check developer.r-project.org, you'll find links to the scripts that we use for building releases and pre-releases of R. These are usually run on a Mac, but shouldn't require much change for Linux. In particular, notice this lead-in in the prerelease script: rm -rf BUILD-dist mkdir

[Rd] configure.ac

2017-08-01 Thread Ramón Fallon
Hi, Just a quick mail to mention that I cannot generate a new configure script using autoconf or autoreconf. I had edited the configure.ac and thought ... "oh, that's my fault", but then I tried it on R-patched and R-3.4.1 without touching configure.ac and had the same problems. The "building R

Re: [Rd] reproducible segmentation fault installing packages on FreeBSD 11.1

2017-08-01 Thread Dirk Eddelbuettel
On 31 July 2017 at 19:38, Joseph Mingrone wrote: | This happens when attempting to install any package. There were no such | problems on 11.0. | | Some other ways to trigger the problem: [...] | trying URL 'https://cloud.r-project.org/src/contrib/Rcpp_0.12.12.tar.gz' | [New LWP 100854 of process

Re: [Rd] Problems with S4 methods dispatching on `...` (aka dotsMethods)

2017-08-01 Thread Andrzej Oleś
Thank you Michael for updating the 3.4 branch, the `callNextMethod()` now works for `...` methods as expected. However, I'm still missing your other patch fixing the handling of arguments in `...` methods. It would be really great if this bugfix could be integrated into the 3.4 branch as well,

Re: [Rd] special latin1 do not print as glyphs in current devel on windows

2017-08-01 Thread Daniel Possenriede
Thank you!. My apologies again for not including the console output in my message before. I sent another e-mail with the output in the meantime, so it should be a bit clearer now, what I am seeing. In case I missed something, please let me know. Yes, I am using latin1 and cp1252 interchangebly

Re: [Rd] special latin1 do not print as glyphs in current devel on windows

2017-08-01 Thread Prof Brian Ripley
You seem confused about Latin-1: those characters are not in Latin-1. (MicroSoft code pages are a proprietary encoding, some code pages such as CP1252 being extensions to Latin-1.) You have not given the 'at a minimum information' asked for in the posting guide so we have no way to reproduce

Re: [Bioc-devel] Add Bioc webhook to existing bioconductor package

2017-08-01 Thread Martin Morgan
On 08/01/2017 03:58 AM, Matthew Myint wrote: Hi, I currently maintain cytofkit, which used to be updated on bioconductor by the git-svn bridge. Our package has a repository on Github, and so far, I've maintained the versions by updating both the SVN and our own Github repositories separately.

Re: [Rd] special latin1 do not print as glyphs in current devel on windows

2017-08-01 Thread Daniel Possenriede
Sorry, I should have included my console output, obviously. So here we go: Wrong UTF-8 escapes with using print in v3.5.0 devel: # R Under development (unstable) (2017-07-30 r73000) -- "Unsuffered Consequences" # Platform: x86_64-w64-mingw32/x64 (64-bit) > x <- c("€", "–", "‰") > Encoding(x)

Re: [Rd] special latin1 do not print as glyphs in current devel on windows

2017-08-01 Thread Daniel Possenriede
Upon further inspection, I think these are at least two problems. First the issue with printing latin1/cp1252 characters in the "80" to "9F" code range. x <- c("€", "–", "‰") Encoding(x) print(x) I assume that these are Unicode escapes!? (Given that Encoding(x) shows "latin1" I'd rather expect

[Bioc-devel] Add Bioc webhook to existing bioconductor package

2017-08-01 Thread Matthew Myint
Hi, I currently maintain cytofkit, which used to be updated on bioconductor by the git-svn bridge. Our package has a repository on Github, and so far, I've maintained the versions by updating both the SVN and our own Github repositories separately. However, for ease of maintenance, I was trying