Re: [Bioc-devel] updates on support.bioconductor.org

2017-08-03 Thread Obenchain, Valerie
Updates are complete. The support site is up and functioning normally. Valerie On 08/03/2017 08:58 AM, Obenchain, Valerie wrote: Updates are scheduled for support.bioconductor.org today August 3, at 5pm EST. If all goes as expected this should take < 15 minutes. The support site may be slow

[Bioc-devel] Initial List of Deprecated Packages for Bioc3.6

2017-08-03 Thread Shepherd, Lori
The Bioconductor Team is starting to identify packages that will be deprecated in the next release to allow the Bioconductor community to respond accordingly. This list will be updated monthly leading up to the release. The initial list of deprecated packages is as follow:

Re: [Rd] rnorm is not truly random used in the lm function

2017-08-03 Thread Victor Tian
I did it purely based on the intuition I built from elsewhere and maybe in R as well. To summarise, it's basically a matter of evaluation ordering issue. It looks like the model.matrix() function has a higher precedence over rnorm(100), i.e., outside in rather than inside out in this specific

Re: [Rd] rnorm is not truly random used in the lm function

2017-08-03 Thread Martin Maechler
> Victor Tian > on Thu, 3 Aug 2017 09:49:57 -0400 writes: > To whom it may concern, > I happened to run the following R code just to check the layout of the > output, but found that the code doesn't work the way I thought it should > work. yes,

[Rd] rnorm is not truly random used in the lm function

2017-08-03 Thread Victor Tian
To whom it may concern, I happened to run the following R code just to check the layout of the output, but found that the code doesn't work the way I thought it should work. '' > lm(rnorm(100) ~ rnorm(100)) Call: lm(formula = rnorm(100) ~ rnorm(100)) Coefficients: (Intercept) -0.07966

Re: [Rd] Problem compiling R patched and R devel on Ubuntu

2017-08-03 Thread Martin Maechler
> Berwin A Turlach > on Thu, 3 Aug 2017 15:27:56 +0800 writes: > G'day all, > since about a week my daily re-compilations of R patched and R devel > are falling over, i.e. they stop with an error during "make > check" (while building the 32

[Rd] Problem compiling R patched and R devel on Ubuntu

2017-08-03 Thread Berwin A Turlach
G'day all, since about a week my daily re-compilations of R patched and R devel are falling over, i.e. they stop with an error during "make check" (while building the 32 bit architecture) on my Ubuntu 16.04.3 LTS machine. Specifically, a test in graphics-Ex.R seems to fail and the last lines of