Re: [Rd] install.packages doesn't produce warnings unless qualified with utils::

On 03/03/2018 3:00 PM, Joshua Ulrich wrote: On Sat, Mar 3, 2018 at 1:33 PM, David Hugh-Jones wrote: Hi all, Assuming this is an R core issue: tryCatch(install.packages("clipr", repos = "bullshit"), warning = function (w) cat("got a warning")) Warning in

Re: [Bioc-devel] error while trying to run BiocCheck

On 03/03/2018 06:45 AM, Claris Baby via Bioc-devel wrote: Dear all,I am trying to build a package for RNA-seq analysis combining different existing packages in bioconductor and am facing problem while trying to run BiocCheck("/home/package_name", `no-check-vignettes`=TRUE) The error

Re: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

Hi Lori, Yes I would take over maintenance. Anything particular that I need to take care of? Otherwise I would just follow: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ to accordingly set this up. Thanks, Ludwig -- Dr. Ludwig Geistlinger CUNY School of Public

Re: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

Hi Ludwig, Were you still interested in taking over maintainership of ToPaSeq? We have switched permission and you should have access now. If you are no longer interested please let us know. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics &

Re: [Rd] install.packages doesn't produce warnings unless qualified with utils::

On Sat, Mar 3, 2018 at 1:33 PM, David Hugh-Jones wrote: > Hi all, > > Assuming this is an R core issue: > > tryCatch(install.packages("clipr", repos = "bullshit"), warning = function > (w) cat("got a warning")) > Warning in install.packages : > unable to access index

[Rd] install.packages doesn't produce warnings unless qualified with utils::

Hi all, Assuming this is an R core issue: tryCatch(install.packages("clipr", repos = "bullshit"), warning = function (w) cat("got a warning")) Warning in install.packages : unable to access index for repository bullshit/src/contrib: cannot open URL 'bullshit/src/contrib/PACKAGES' Warning in

[Bioc-devel] Single Package Builder temporarily down

There have been some updates to the builders and will require some additional updates to the single package builder. While this is occurring the single package builder for new package submissions will temporarily be down. We will notify when the updates are complete and the single package

[Bioc-devel] error while trying to run BiocCheck

Dear all,I am trying to build a package for RNA-seq analysis combining different existing packages in bioconductor and am facing problem while trying to run  BiocCheck("/home/package_name", `no-check-vignettes`=TRUE) The error generated is as follows: This is BiocCheck version 1.14.0. BiocCheck