Re: [Bioc-devel] About Adding SSH Keys to GitHub Account

Hi, Martin and All Sorry for forgetting "reply all". After setting the web-hook, build system properly recongnizes the version change of my package. However, another error message is generated, the build results were: "ERROR". https://github.com/Bioconductor/Contributions/issues/787 I

[Rd] unexpected behavior of unzip with list=T and unzip=/usr/bin/unzip

Hello, I encountered some unexpected behavior of unzip when using info-zip's unzip instead of R's internal program. Specifically, unzip("file.zip", list=TRUE, unzip=/usr/bin/unzip) produces incorrect output if the zip archive has filenames with spaces, and results in an error if the zip archive

Re: [Rd] [R] R is creating a new level which is emty after importing a SAS file

It is not obvious that this is an error. If your nominal variable in SAS has a level which is not present in data, then R might just be making a faithful translation. There is a distinction between (a) having a gender variable with two levels of which 0 females and (b) pretending that male is

Re: [R-pkg-devel] Weird error on CRAN linux check

On 04/07/2018 4:04 PM, Joris Meys wrote: On Wed, Jul 4, 2018 at 9:31 PM, Duncan Murdoch > wrote: That shouldn't matter.  That function was created in a local environment whose parent is (probably by the huxtable:::make_setter_getters function,

[Bioc-devel] as.data.frame for GRanges when one meta column is a data frame

Dear all, It seems that the devel branch of Bioconductor has made changes/improvements on the behavior of as.data.frame. In the case that input is a GRanges with a meta column of data frame, as.data.frame in devel will flatten the nested data frame. I made an example below:

Re: [R-pkg-devel] Weird error on CRAN linux check

On 04/07/2018 3:44 PM, Iñaki Úcar wrote: It seems Joris is right. The following patch seems to solve the issue for me: diff --git a/R/attributes.R b/R/attributes.R index e7f4ab9..18ebdab 100644 --- a/R/attributes.R +++ b/R/attributes.R @@ -156,6 +156,7 @@ make_getter_setters <-

Re: [R-pkg-devel] Weird error on CRAN linux check

It seems Joris is right. The following patch seems to solve the issue for me: diff --git a/R/attributes.R b/R/attributes.R index e7f4ab9..18ebdab 100644 --- a/R/attributes.R +++ b/R/attributes.R @@ -156,6 +156,7 @@ make_getter_setters <- function(attr_name, attr_type = c('cell', 'row', 'col', '

Re: [R-pkg-devel] Weird error on CRAN linux check

I just took a look at your repo, and two remarks: - you use roxygen, and used both @export and @S3method. The latter one is deprecated, so you should use only @export, or @method (see eg Hadley's answer here : https://github.com/klutometis/roxygen/issues/741 ) - You're using some code in

Re: [R-pkg-devel] Weird error on CRAN linux check

I figured that. Actually I just tried this. I now get the interesting result that all calls to a generic fail with the UseMethod error...? On Wed, 4 Jul 2018 at 16:12, Joris Meys wrote: > On Wed, Jul 4, 2018 at 4:22 PM, Hadley Wickham > wrote: > >> I don't think it's related to the error, but

Re: [R-pkg-devel] Weird error on CRAN linux check

On Wed, Jul 4, 2018 at 4:22 PM, Hadley Wickham wrote: > I don't think it's related to the error, but you shouldn't be exporting > this: > > export("align<-.huxtable") > > You should generally only export the method. > Hadley means to say that you should generally only export the generic, not

Re: [R-pkg-devel] Weird error on CRAN linux check

I don't think it's related to the error, but you shouldn't be exporting this: export("align<-.huxtable") You should generally only export the method. Hadley On Wed, Jul 4, 2018 at 9:00 AM, David Hugh-Jones wrote: > Hi all, > > The following shows an error for my package: >

[R-pkg-devel] Weird error on CRAN linux check

Hi all, The following shows an error for my package: https://www.r-project.org/nosvn/R.check/r-release-linux-x86_64/huxtable-00check.html Here's an excerpt: > ### ** Examples > > > ht <- huxtable(a = 1:3, b = 1:3) > align(ht) <- 'right' Error in UseMethod("align<-") : no applicable method for