Hello,
Thanks for the pointer.
Inline.
On 29/08/2018 04:17, Henrik Bengtsson wrote:
FYI, this behavior is documented in Section 3.4.1 'Indexing by
vectors' of 'R Language Definition' (accessible for instance via
help.start()):
"*Integer* [...] A special case is the zero index, which has null
FYI, this behavior is documented in Section 3.4.1 'Indexing by
vectors' of 'R Language Definition' (accessible for instance via
help.start()):
"*Integer* [...] A special case is the zero index, which has null
effects: x[0] is an empty vector and otherwise including zeros among
positive or
# Issue
'x || y' performs 'x[1] || y' for length(x) > 1. For instance (here
using R 3.5.1),
> c(TRUE, TRUE) || FALSE
[1] TRUE
> c(TRUE, FALSE) || FALSE
[1] TRUE
> c(TRUE, NA) || FALSE
[1] TRUE
> c(FALSE, TRUE) || FALSE
[1] FALSE
This property is symmetric in LHS and RHS (i.e. 'y || x' behaves
Okay, Uwe, I will close the connection between examples. Thanks Henrik,
Duncan, Gabor, and Uwe for participating in the discussion.
-- David
On Mon, Aug 27, 2018 at 4:47 PM Uwe Ligges
wrote:
>
> I still do not undertsand why you cannot stop scala and related
> connections at the end of each
Thanks for this. Also Duncan's description of how code in the R directory is
executed.
I've more or less figured out a workaround. Unfortunately Georgi's solution
doesn't quite
do the trick. Here is my current understanding and solution.
Issue: I want to get root of a function of 1 parameter
On 08/28/2018 11:46 AM, Hervé Pagès wrote:
On 08/27/2018 11:01 PM, Martin Morgan wrote:
On 08/28/2018 12:19 AM, Charles Plessy wrote:
Dear Bioconductor developers,
In the CAGEr package, I created a "CAGEexp" class that extends
"MultiAssayExperiment" without adding new slots, in order to
I am using Sublime Text as my editor. If I run `subl -n .Rprofile` in bash, a
file would be opened in a new window.
Back in R, if I run this
> file.edit(".Rprofile", editor="'subl -n'")
sh: 'subl -n': command not found
Warning message:
error in running command
However, the interesting bit
On 08/27/2018 11:01 PM, Martin Morgan wrote:
On 08/28/2018 12:19 AM, Charles Plessy wrote:
Dear Bioconductor developers,
In the CAGEr package, I created a "CAGEexp" class that extends
"MultiAssayExperiment" without adding new slots, in order to define
generic
functions that require
You could use an AMI with R 3.4 installed. See the 'AMI IDs' section:
https://www.bioconductor.org/help/bioconductor-cloud-ami/#ami_ids
Valerie
On 08/27/2018 11:48 AM, kushal kumar dey wrote:
Hi,
I just found based on user reports that the old version of my package
Logolas for R 3.4 and Bioc
You need to push any associated changes to the Bioconductor git server.
See the help pages found here:
http://bioconductor.org/developers/how-to/git/
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Hi There,
I need to make a few minor change to my INDEED package, which has already
been accepted. I want to know if I need to do anything other than modify
the codes and bump up the version number.
Thanks
ZL
[[alternative HTML version deleted]]
On 28/08/2018 9:17 AM, J C Nash wrote:
Indeed, it appears that globalVariables must be outside the function. However,
I had quite a bit of
fiddle to get things to work without errors or warnings or notes. While I now
have a package that
does not complain with R CMD check, I am far from
If you don't insist on putting the variable in the global environment,
variations of the following give a cleaner solution:
TraceSetup_1 <- local({
ifn = 0
igr = 0
ftrace = FALSE
fn = NA
gr = NA
function(ifn=0, igr=0, ftrace=FALSE, fn=NA, gr=NA){
ifn<<- ifn
Hi John,
The error was on our end. I've cleaned this up and you should now have access
to multiHiCcompare and HiCcompare.
Valerie
On 08/27/2018 11:13 PM, John Stansfield wrote:
I recently had a new package accepted to Bioconductor, however when I try
to push changes upstream I get the
Indeed, it appears that globalVariables must be outside the function. However,
I had quite a bit of
fiddle to get things to work without errors or warnings or notes. While I now
have a package that
does not complain with R CMD check, I am far from satisfied that I can give a
prescription. I had
I recently had a new package accepted to Bioconductor, however when I try
to push changes upstream I get the following error:
FATAL: W any packages/multiHiCcompare j.stansfield DENIED by fallthru
(or you mis-spelled the reponame)
I also checked on the bioconductor git credentials and under
On 08/28/2018 12:19 AM, Charles Plessy wrote:
Dear Bioconductor developers,
In the CAGEr package, I created a "CAGEexp" class that extends
"MultiAssayExperiment" without adding new slots, in order to define generic
functions that require CAGEr-specific contents in the colData slot.
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