Hi,
My package "REMP" is failing to pass R CMD build on all platforms in the devel
version of Bioconductor, so I need to fix it.
After I installed R 3.6 and Bioconductor 3.9, I could not install some
dependent packages including 'IlluminaHumanMethylation450kanno.ilmn12.hg19',
Dear all,
I am planning to submit a package into Bioconductor. But BiocCheck() gave a
warning about the size of the git pack file:
$warning
[1] "The following files are over 5MB in size:
'.git/objects/pack/pack-29a3f2d2d1ed7d701d59dd2ce921229f2b9dab68.pack'"
I tried to use git filter-branch
On 2/20/19 7:55 PM, Toby Hocking wrote:
Update: I have observed that stringi::stri_sub is linear time complexity,
and it computes the same thing as base::substring. figure
https://github.com/tdhock/namedCapture-article/blob/master/figure-substring-bug.png
source:
The 'long long' type does not exist in the C++98 standard, so you need to
explicitly request C++11 or C++14 (the former which is now fairly broadly
supported across compilers on different systems).
For more detail, see in the R extensions manual:
Dear Martin and Ben,
I agree that a warning is a good idea (and perhaps that wasn't clear in my
response to Ben's post).
Also, it would be nice to correct the omission in the help file, which as far
as I could see doesn't mention that a contrast-generating function (as opposed
to its quoted
The Bioconductor Team is continuing to identify packages that will be
deprecated in the next release to allow for the Bioconductor community to
respond accordingly. The list will be updated monthly.
The current list of deprecated packages for Bioc 3.9 is as follows:
Maintainer requested
> Ben Bolker
> on Thu, 21 Feb 2019 08:18:51 -0500 writes:
> On Thu, Feb 21, 2019 at 7:49 AM Fox, John wrote:
>>
>> Dear Ben,
>>
>> Perhaps I'm missing the point, but contrasts.arg is documented to be a
list. From ?model.matrix: "contrasts.arg: A list, whose
Dear Paul
The advantage of a data-only supplementary package is that users who
live in countries where they have either a very slow connection or where
they have to pay per byte to download will be spared 5MB every time you
update your main package. I do not think the fact that you never
Dear developers,
CRAN auto checks and winbuilder will be down from Feb 22, 3.30 pm CET to
Feb 24, 4pm CET. Submission to CRAN will still be possible.
This will be caused by scheduled network maintainance work in our
building in Dortmund.
Best,
Uwe Ligges
Hi all,
I am revisiting this and wondering if it would be a case in which I should
submit as-is, and include justification for ignoring the NOTE about
excessive directory size.
Best,
Paul Hibbing
On Mon, Feb 18, 2019 at 3:20 PM Paul Hibbing wrote:
> Hi all,
>
> I am preparing a package that
Dear all
I would like to update gmp package - this package link to a c++ library gmp.
But windows c++ compilation warns at:
d:/Compiler/gcc-4.9.3/local330/include/gmp-x64.h:140:23: warning: ISO
C++ 1998 does not support 'long long' [-Wlong-long]
I have not this warning on linux.
On my computer
It's not a problem per se to put additional information into class htest
objects (hey, it's S3 after all...) and there is a precedent in chisq.test
which returns $observed and $expected.
Getting such information printed by print.htest is more tricky, although it
might be possible to (ab)use
> Marc Schwartz via R-devel
> on Thu, 21 Feb 2019 14:39:45 +0100 writes:
> Hi,
> In follow up to the thread on R-Help yesterday:
>https://stat.ethz.ch/pipermail/r-help/2019-February/461725.html
> I am attaching a proposed patch against the trunk version of
> Extract.Rd, with
> Thomas J Leeper
> on Thu, 21 Feb 2019 22:21:21 + writes:
> Hi John,
> Thanks for your reply. Of course I could write a package and of course I
> would find that trivial to do. The point is this is a main entry point to
R
> for probably (at this point) hundreds
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