[Rd] Aggregate function FR

2019-11-20 Thread Morgan Morgan
Hi, I was wondering if it would be possible to add an argument to the aggreagte function to retain NA by categories?(default can not to in order to avoid breaking code) Please see below example: df = iris df$Species[5] = NA aggregate(`Petal.Width` ~ Species, df, sum) # does not include NA

Re: [Bioc-devel] New package submission : No reviewer communication.

2019-11-20 Thread Ralf Weber
Dear Steffen and Lori, Steffen, many thanks for highlighting packages that are waiting review, including our packages. Lori, please, let us know what input you need from us to start the reviewing process for the different packages (i.e. struct, structToolbox, sbcms, pmp). We are keen on getting

Re: [Bioc-devel] New package submission : No reviewer communication.

2019-11-20 Thread Shepherd, Lori
Those are a special set of packages that were submitted by the same author under a special circumstance. We are working with that author to work through all the packages (which are related). All other packages aim to have a review and response within 2-3 weeks. Lori Shepherd Bioconductor

Re: [Rd] Why is matrix product slower when matrix has very small values?

2019-11-20 Thread Serguei Sokol
Le 20/11/2019 à 09:56, Hilmar Berger a écrit : Hi Florian, just a guess, but couldn't it be that the multiplication of very small values leads to FP underflow exceptions which have to be handled by BLAS in a less efficient way than "normal" multiplications handled by SIMD instructions ?

Re: [Rd] Why is matrix product slower when matrix has very small values?

2019-11-20 Thread Hilmar Berger
Hi Florian, just a guess, but couldn't it be that the multiplication of very small values leads to FP underflow exceptions which have to be handled by BLAS in a less efficient way than "normal" multiplications handled by SIMD instructions ? Best regards, Hilmar On 19/11/2019 15:09, Florian

Re: [Bioc-devel] New package submission : No reviewer communication.

2019-11-20 Thread Neumann, Steffen
Hi, I think there is quite some backlog from September https://github.com/Bioconductor/Contributions/labels/1.%20awaiting%20moderation Maybe the BioC team can use the momentum to assign more reviewers ? Yours, Steffen On Tue, 2019-11-19 at 19:07 +, Turaga, Nitesh wrote: > No problem at