Hi Brian,
The checkbashisms script is invoked by the R checks automatically:
https://github.com/wch/r-source/blob/trunk/src/library/tools/R/check.R#L1216-L1267
Thus there shouldn't be any need for you to invoke it manually in your
configure script, even less so to worry about its presence.
Hi R-pkg-devel,
My package
https://github.com/knausb/vcfR
has been archived on CRAN because I was asked by CRAN to address issues
that I was unable to address before the deadline I was given. The issue I'm
struggling with is that when I use
```
R CMD check --as-cran vcfR_1.12.0.tar.gz
```
I
Does this constitute a bug, or is there something I'm missing?
assigning sub-elements of a sparse Matrix via M[X]<-..., where X is a
2-column matrix, appears to drop user-assigned attributes. I dug around
in the R code for Matrix trying to find the relevant machinery but my
brain started to
Thank you for bringing this to our attention. The package guidelines should now
reflect this change.
Best,
Kayla
On 8/10/20, 5:06 AM, "Bioc-devel on behalf of Manders-2, F.M."
wrote:
Hi All,
R BiocCheck no longer seems to accept a Author/Maintainer field.
Forgot the url:
https://win-vector.com/2014/05/30/trimming-the-fat-from-glm-models-in-r/
On Aug 10, 2020, at 11:50 AM, John Mount
mailto:jmo...@win-vector.com>> wrote:
Thank you for your suggestion. I do know how to work around the issue. I
usually build a fresh environment as a child of
Thank you for your suggestion. I do know how to work around the issue. I
usually build a fresh environment as a child of base-environment and then
insurt the weights there. I was just trying to provide an example of the issue.
emptyenv() can not be used, as it is needed for the eval (errors
On 10/08/2020 1:42 p.m., John Mount wrote:
I wish I had started with "I am disappointed that lm() doesn't continue its search for weights
into the calling environment" or "the fact that lm() looks only in the formula
environment and data frame for weights doesn't seem consistent with how other
I assume you are concerned about this because the formula is defined
in one environment and the model fitting with weights occurs in a
separate function. If that is the case then the model fitting
function can create a new environment, a child of the formula's
environment, add the weights
I wish I had started with "I am disappointed that lm() doesn't continue its
search for weights into the calling environment" or "the fact that lm() looks
only in the formula environment and data frame for weights doesn't seem
consistent with how other values are treated."
But I did not. So I
These recently introduced 'R CMD check' WARNINGs were disabled again
in R-devel on July 8, 2020:
r78793:
https://github.com/wch/r-source/commit/ccd903e47ab42e1c181396256aea56454a2e70c9
r78794:
https://github.com/wch/r-source/commit/b70f90ae11dd516c1c954ed15eb5a7c2a304b37f
This is because
To all: I'd like to apologize for my negative tone and imprecision in my
points. Thanks for the discussion and the effort you put into these systems.
> On Aug 9, 2020, at 12:35 PM, Duncan Murdoch wrote:
>
> On 09/08/2020 3:15 p.m., Ben Bolker wrote:
>> On 8/9/20 3:08 PM, Duncan Murdoch wrote:
Hi Ulrich --
Certainly msa provides very useful functionality not present in other
Bioconductor packages.
It's not possible for the Bioconductor core team to take on additional
maintenance responsibilities; the best bet is to find someone else in the
community willing and able to maintain
Hi All,
R BiocCheck no longer seems to accept a Author/Maintainer field.
(https://github.com/Bioconductor/BiocCheck/commit/e0176f6591c771774f6cb05d4ff8bc1b145ad10e)
* Checking for valid maintainer...
* ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
However, the package
Thanks Ben for verifying the issue. It is always reassuring to hear
when others can reproduce the problem.
I wrote a small patch that fixes the issue
(https://github.com/r-devel/r-svn/pull/11):
diff --git a/src/nmath/qnbinom.c b/src/nmath/qnbinom.c
index b313ce56b2..d2e8d98759 100644
---
Hello,
R 4.0.2 on Ubuntu 20.04, sessionInfo() below.
I believe there are two typos in ?file.path, section Value, 2nd paragraph.
1. There is a close parenthesis missing after Encoding, as it is
reading is a bit confusing, I had to backtrack and repeat.
2. I'm not a native language speaker but
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