Re: [R-pkg-devel] R CMD check "unable to verify current time"

2020-08-27 Thread John Fox
Dear Dustin, On 2020-08-27 8:26 p.m., Tracy, Josef wrote: Hi John, Duncan explained the cause of the problem, but i'm afraid I didn't follow how one solves it.  Did you manage to get a check without that note? I didn't -- I just disregarded the note assuming that it would go away when the

Re: [Rd] utils::isS3stdGeneric chokes on primitives and identity

2020-08-27 Thread Gabriel Becker
Trace adds something to the body of the function, so it does make sense that it doesn't. Whether traced functions still technically meet the definition of standard s3 generic or not is, I suppose, up for debate, but I would say that they should, I think. As before, if desired I can work on a

Re: [R-pkg-devel] Checking for future file timestamps - warning with worldclockapi HTTP status 403 Site Disabled

2020-08-27 Thread Ben Bolker
It seems to have gotten worse at the moment (package checking on my local machine hangs at this step). Sorry if this is cross-threading. On 3/19/19 7:11 AM, Rainer M Krug wrote: Can anyone confirm if this has been fixed? I would like to remove the _R_CHECK_SYSTEM_CLOCK_=0 but would like to

Re: [R-pkg-devel] R CMD check "unable to verify current time"

2020-08-27 Thread John Fox
Dear Duncan, Thank you and the others who responded to my message. John On 2020-08-27 2:17 p.m., Duncan Murdoch wrote: R tries to get the time from http://worldtimeapi.org/api/timezone/UTC or http://worldclockapi.com/api/json/utc/now The first one doesn't accept UTC as a timezone; it

Re: [Rd] R 4.0.2 64-bit Windows hangs

2020-08-27 Thread Jeroen Ooms
On Wed, Aug 26, 2020 at 7:54 PM Tomas Kalibera wrote: > > On 8/25/20 6:14 PM, Tomas Kalibera wrote: > > On 8/22/20 9:33 PM, Jeroen Ooms wrote: > >> On Sat, Aug 22, 2020 at 9:10 PM Tomas Kalibera > >> wrote: > >>> On 8/22/20 8:26 PM, Tomas Kalibera wrote: > On 8/22/20 7:58 PM, Jeroen Ooms

Re: [Rd] utils::isS3stdGeneric chokes on primitives and identity

2020-08-27 Thread Antoine Fabri
Should it work on traced functions ? As it is now it doesn't. Best, Antoine Le jeu. 20 août 2020 à 09:58, Kurt Hornik a écrit : > > Gabriel Becker writes: > > > I added that so I can look at the proposed fix and put it or something > > similar in bugzilla for review final review. > > >

Re: [R-pkg-devel] R CMD check "unable to verify current time"

2020-08-27 Thread Duncan Murdoch
R tries to get the time from http://worldtimeapi.org/api/timezone/UTC or http://worldclockapi.com/api/json/utc/now The first one doesn't accept UTC as a timezone; it appears to want etc/UTC instead. The second one is offline. Duncan Murdoch If both of those fail, you'll get the message you

Re: [R-pkg-devel] changing maintainer email address

2020-08-27 Thread Michael Dewey
Dear Josef From the policy Explain any change in the maintainer’s email address and if possible send confirmation from the previous address (by a separate email to cran-submissi...@r-project.org) or explain why it is not possible. Burned into my cortex since I did it incorrectly a few years

[R-pkg-devel] R CMD check "unable to verify current time"

2020-08-27 Thread John Fox
Dear r-package-devel list members, I got the following note when checking two different packages today --as-cran, both under R 4.0.2 and under R-devel, on my Windows 10 and macOS Catalina systems, and on several platforms on rhub: * checking for future file timestamps ... NOTE unable

[R-pkg-devel] changing maintainer email address

2020-08-27 Thread Tracy, Josef
Hi, I submitted a package, "PhysActBedRest" to the CRAN a couple of years ago and am trying to update it. In writing the update, I realized I forgot to update my email address when I changed institutions. As a consequence, when I run CMD check on the updated package there is a NOTE that the

Re: [R-pkg-devel] Package inputenc Error: Unicode char ‐ (U+2010) during Windows build

2020-08-27 Thread Joshua Harrison
Hi Uwe, Thanks for the response and for mentioning the 'tools::' functions. Those functions were super helpful in identifying a hyphen that I missed in a supporting file that roxygen used to build the manual. My package builds without warnings and errors now on a few systems, so I think I am

Re: [R-pkg-devel] Package inputenc Error: Unicode char ‐ (U+2010) during Windows build

2020-08-27 Thread Uwe Ligges
Hyphens that, e.g., get auto generated in MS Word are non ASCII. You have to declare an appropriate encoding, or even better, replace by regular hypehsn. See functions tools:::showNonASCII tools:::showNonASCIIfile that may help to see where these are... Best, Uwe Ligges On 25.08.2020

Re: [Bioc-devel] Request package deprecation

2020-08-27 Thread Levi Waldron
Gives me some nostalgia because I think simpleaffy was the first Bioconductor package I used! Il gio 27 ago 2020, 1:46 PM Shepherd, Lori ha scritto: > Thank you for letting us know. I will begin the deprecation process for > the package. Thank you for your contributions. > > > Lori Shepherd >

Re: [Bioc-devel] Request package deprecation

2020-08-27 Thread Shepherd, Lori
Thank you for letting us know. I will begin the deprecation process for the package. Thank you for your contributions. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263

[Bioc-devel] Request package deprecation

2020-08-27 Thread Crispin Miller
Hi there, I’ve moved email address since creation of this package but I would like to request deprecation and End of Life for the package: simpleaffy It’s been superseded and is out of date. Best wishes, Crispin Miller [[alternative HTML version deleted]]