Re: [Rd] quantile() names

2020-12-14 Thread Avi Gross via R-devel
Question: is the part that Ed Merkle is asking about the change in the expected NAME associated with the output? He changed a sort of global parameter affecting how many digits he wants any compliant function to display. So when he asked for a named vector, the chosen name was based on his request

Re: [Rd] [External] R crashes when using huge data sets with character string variables

2020-12-14 Thread Arne Henningsen
Dear all Thanks a lot for your very helpful explanations and suggestions. I have increased the size of my computer's "swapfile" and this solved my problem, i.e., R no longer crashes when I work with character string variables in my large data set (probably until I work with an even larger data set

Re: [Rd] quantile() names

2020-12-14 Thread Abby Spurdle
The "value" is *not* 975. It's 975.025. The results that you're observing, are merely the byproduct of formatting. Maybe, you should try: quantile (x, .975, type=4) Which perhaps, using default options, produces the result you're expecting? On Tue, Dec 15, 2020 at 8:55 AM Merkle, Edgar C.

Re: [Rd] quantile() names

2020-12-14 Thread Gabriel Becker
Hi Edgar, I certainly don't think quantile(x, .975) should return 980, as that is a completely wrong answer. I do agree that it seems like the name is a bit offputting. I'm not sure how deep in the machinery you'd have to go to get digits to no effect on the names (I don't have time to dig in rig

[Rd] quantile() names

2020-12-14 Thread Merkle, Edgar C.
All, Consider the code below options(digits=2) x <- 1:1000 quantile(x, .975) The value returned is 975 (the 97.5th percentile), but the name has been shortened to "98%" due to the digits option. Is this intended? I would have expected the name to also be "97.5%" here. Alternatively, the return

[Rd] Feature request: better warning message from or documentation of terms.formula when LHS variables are after . - on RHS

2020-12-14 Thread Benjamin Christoffersen
Dear Sirs, Running the following code with R devel (2020-11-30 r79529): library(survival) terms.formula(Surv(time, status) ~ . - time - status, data = lung[, c("time", "status", "ph.ecog")]) gives: Warning message: In terms.formula(Surv(time, status) ~ . - time - status, data = lung[, :

[Rd] Printing Unicode escapes with 6 digits may be problematic

2020-12-14 Thread Korpela Mikko (MML)
A recent R-devel commit introduces a change in the way non-printable Unicode characters are shown as an escape code. Whereas large code points were previously printed using an escape code of 8 hexadecimal digits, with initial zeros, the present code (tested with R-devel r79623 on Ubuntu Linux) o

[Rd] Feature request: adding a log.p= option to stats::p.adjust?

2020-12-14 Thread Aaron Lun
Dear list, Is there any interest in adding a log.p= option to p.adjust() so that it can accept log-transformed p-values and return log-transformed adjusted p-values? I have some functions that, on occasion, return very low p-values. To avoid underflow in such cases, I allow my users to set l