Re: [Rd] R 4.0.1-4.0.5 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7-7.9

2021-04-09 Thread Ryan Novosielski
> On Jun 25, 2020, at 8:06 AM, Ivan Krylov wrote: > > On Wed, 24 Jun 2020 18:56:06 + > Ryan Novosielski wrote: > > On my machine, getOption('expressions') is 5000 and the example from > the test correctly stops with length(traceback()) == 2500. (And the > simpler example of f <- function()

Re: [R-pkg-devel] CRAN nightly tests

2021-04-09 Thread Roy Mendelssohn - NOAA Federal via R-package-devel
Thanks.Will do so, -Roy > On Apr 9, 2021, at 4:23 PM, Uwe Ligges > wrote: > > > > On 09.04.2021 21:02, Roy Mendelssohn - NOAA Federal via R-package-devel wrote: >> Just trying to get some information about the CRAN nightly tests. Are all >> the tests for a particular package run a the

Re: [R-pkg-devel] CRAN nightly tests

2021-04-09 Thread Uwe Ligges
On 09.04.2021 21:02, Roy Mendelssohn - NOAA Federal via R-package-devel wrote: Just trying to get some information about the CRAN nightly tests. Are all the tests for a particular package run a the same time? No. If not, is there any way to determine when a particular test was last run

Re: [Rd] encodeString converts to UTF-8 on Windows R-devel

2021-04-09 Thread Gábor Csárdi
For the record, this was a bug introduced here: https://github.com/wch/r-source/commit/1c149eddee9c6d4b87a987a964a611bf8fe43a74 and fixed today here: https://github.com/wch/r-source/commit/ec0761e63598d38eb5e8ab3fb995da06ab5c91ee G. On Fri, Mar 5, 2021 at 2:52 PM Gábor Csárdi wrote: > > Which

[R-pkg-devel] CRAN nightly tests

2021-04-09 Thread Roy Mendelssohn - NOAA Federal via R-package-devel
Just trying to get some information about the CRAN nightly tests. Are all the tests for a particular package run a the same time? If not, is there any way to determine when a particular test was last run (there is a time at the top of the page, but it may or may not apply to all of the

Re: [R-pkg-devel] Package Vignette depends on Ensembl, server certificate issue?

2021-04-09 Thread Dr. Connie Brett
Thank you for pointing me to this resource, works like a charm! > On Apr 9, 2021, at 12:14 AM, Jeff Newmiller wrote: > > Maybe use r.rsp? > > https://blog.r-hub.io/2020/06/03/vignettes/ > How to include my pre-print / cheatsheet as a PDF vignette? > > > > On April 8, 2021 12:39:20 PM PDT,

Re: [Bioc-devel] Error building on Mac

2021-04-09 Thread Kern, Lori
We also did R updates to a lot of the builders over the past few days, so there might have been some intermittent package unavailability relating to the updates. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics &

[R-pkg-devel] Problem with building with libcurl on Windows

2021-04-09 Thread Janssen-10, R.R.E. (Roel)
Dear all, The package I've tried to submit uses HTSlib, which in turn uses libcurl. From the build logs, I think there is a version mismatch, or configuration problem with libcurl: https://win-builder.r-project.org/incoming_pretest/USCDtools_0.0.1_20210409_093124/Windows/00install.out The

Re: [R-pkg-devel] Debugging M1mac problems [solved]

2021-04-09 Thread Ivan Krylov
On Sat, 27 Mar 2021 17:26:16 +0300 Ivan Krylov wrote: > I'm probably doing something stupid with the file names that usually > works but isn't guaranteed to work in all cases, but I cannot figure > it out. Long story short, the problem turned out to be that I called basename() and dirname() on

Re: [Bioc-devel] Suppressing messages from Rprofile

2021-04-09 Thread Mike Smith
Thanks both for the suggestions. I ended up piping the output to tail -n1 I've no idea how portable that is, but presumably similar to trying a grep/sed approach. Cheers, Mike On Thu, 8 Apr 2021 at 15:48, Kasper Daniel Hansen < kasperdanielhan...@gmail.com> wrote: > You could also preprend

Re: [R-pkg-devel] Package Vignette depends on Ensembl, server certificate issue?

2021-04-09 Thread Jeff Newmiller
Maybe use r.rsp? https://blog.r-hub.io/2020/06/03/vignettes/ How to include my pre-print / cheatsheet as a PDF vignette? On April 8, 2021 12:39:20 PM PDT, "Dr. Connie Brett" wrote: >Hello, >I have a package (DGEobj) that depends on the Ensembl service to look >up information used to build

[R-pkg-devel] Package Vignette depends on Ensembl, server certificate issue?

2021-04-09 Thread Dr. Connie Brett
Hello, I have a package (DGEobj) that depends on the Ensembl service to look up information used to build the vignette. My builds work fine on Travis, locally and on R-hub. Occasionally I have seen blips with regard to internet-based resources not being available, and my vignette depends on a