[Rd] random network disconnects

2023-07-31 Thread Patrick Burns
I'm experiencing a weird issue, and wondering if anyone has seen this, and better yet has a solution. At work we are getting lots of issues with 'permission denied' or 'network not found' and so forth when reading and writing between our machines and a file server. This happens randomly so

Re: [Bioc-devel] Omada package failing due to removed dependency

2023-07-31 Thread Kern, Lori via Bioc-devel
You'll need to find the merge conflicts and resolve them. Recommit those files and then it should go. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263

Re: [Bioc-devel] Omada package failing due to removed dependency

2023-07-31 Thread Sokratis Kariotis
Tried but its Already up to date. On Mon, 31 Jul 2023, 7:22 pm Martin Grigorov, wrote: > Hi Sokratis, > > You need to do "git pull --rebase" before trying to push. > Most probably the version has been bumped upstream. > > Regards, > Martin > > On Mon, Jul 31, 2023 at 2:16 PM Sokratis Kariotis <

Re: [Bioc-devel] Omada package failing due to removed dependency

2023-07-31 Thread Martin Grigorov
Hi Sokratis, You need to do "git pull --rebase" before trying to push. Most probably the version has been bumped upstream. Regards, Martin On Mon, Jul 31, 2023 at 2:16 PM Sokratis Kariotis < sokratiskario...@gmail.com> wrote: > Hey all, > > I created a new key and now I can commit etc but

Re: [Bioc-devel] Omada package failing due to removed dependency

2023-07-31 Thread Sokratis Kariotis
Hey all, I created a new key and now I can commit etc but there is a conflict that is not allowing me to go ahead. My commands: git add . git commit -m "Update metrics" git push upstream main:devel *The above results in the following error:* *Enumerating objects: 19, done.Counting

Re: [Rd] Bug in perl=TRUE regexp matching?

2023-07-31 Thread Tomas Kalibera
On 7/25/23 03:13, Brodie Gaslam via R-devel wrote: On 7/24/23 4:10 AM, Duncan Murdoch wrote: On 23/07/2023 9:01 p.m., Brodie Gaslam wrote: On 7/23/23 4:29 PM, Duncan Murdoch wrote: The help page for `?gsub` says (in the context of performance considerations): "... just one UTF-8

Re: [Bioc-devel] Omada package failing due to removed dependency

2023-07-31 Thread Mike Smith
Hi Sokratis, Everything in Bioconductor is built around the central Bioconductor git repositories. The only way to get changes out to users is to commit them to git.bioconductor.org and then the build system will pick those up, run the tests and checks, create new versions of packages, and make