[Bioc-devel] Bioconductor Code of Conduct Reminder

Hello Bioconductor Community, It is important to reflect on the importance of upholding Bioconductor values often: our commitment to an open approach to science, collaboration, diversity, inclusivity, and a welcoming environment is

[Rd] `sort` hanging without R_CheckUserInterrupt()

Hi everyone, Just a quick question/problem I encountered, wanted to make sure this is known behavior. Running `sort` on a long vector can take quite a bit of time, and I found today that there don’t seem to be any calls to `R_CheckUserInterrupt()` during execution. Calling something like

Re: [Bioc-devel] Fw: MungeSumstats Bioconductor

Hey Herve, Thanks for this, I'm going to implement that now. One thing I wondered, is it only the tests in the longtest/ folder that run on these weekly builds or both those and the tests in test/? I'm wondering should I duplicate the tests in both folders that I want to run in both? Cheers,

Re: [R-pkg-devel] Conversion failure in 'mbcsToSbcs'

Dear Ivan and all: Thank you for this helpful advice. I have received confirmation that the package is now on its way to CRAN. Many thanks again. LAR On Wed, Feb 21, 2024 at 12:45 PM Ivan Krylov wrote: > > В Wed, 21 Feb 2024 12:29:02 + > Package Maintainer пишет: > > > Error: processing

Re: [Rd] Tcl socket server (tcltk) does not work any more on R 4.3.2

The obvious problem with while (Tcl_DoOneEvent(TCL_DONT_WAIT) && max_ev) max_ev—; is that once something does the http server thing, you'll be running Tcl_DoOneEvent max_ev times, _every_ time you hit TclSpinLoop. I wonder it we could some sort of hybrid between this and Tcl_ServiceAll()?

Re: [Rd] Tcl socket server (tcltk) does not work any more on R 4.3.2

On 2/21/24 08:01, webmail.gandi.net wrote: Thank you, Ivan for this investigation. I inspected the R changes file (https://cran.r-project.org/doc/manuals/r-devel/NEWS.html) and found nothing about this. I should inspect the sources too! It could possibly break other Tcl/Tk related stuff.

Re: [Rd] Tcl socket server (tcltk) does not work any more on R 4.3.2

I don't think we're going to fix this before 4.3.3. Given that it has gone unnoticed since June 2022 (yes '22) and that tampering in this area has a history of popping up complications in other areas, I think we should leave it alone until 4.4.0. (I see that Ivan and Tomas has been on the

[Bioc-devel] Nominations for Bioconductor Awards 2024

Bioconductor is excited to announce an opportunity to recognize those making significant outstanding contributions to the Bioconductor community. The Bioconductor project is announcing the call for Bioconductor Awards, honoring various forms of contributions to the project. Four awardees will

Re: [Rd] Tcl socket server (tcltk) does not work any more on R 4.3.2

В Wed, 21 Feb 2024 08:01:16 +0100 "webmail.gandi.net" пишет: > Since the {tcltk} package was working fine with "while > (Tcl_DoOneEvent(TCL_DONT_WAIT) && max_ev) max_ev—;", unless there is > a clear performance enhancement with "while (i-- && > Tcl_ServiceAll())", it would perhaps be wise to

Re: [R-pkg-devel] Conversion failure in 'mbcsToSbcs'

В Wed, 21 Feb 2024 12:29:02 + Package Maintainer пишет: > Error: processing vignette 'ggenealogy.Rnw' failed with diagnostics: > chunk 58 (label = plotCBText) In order to use the non-standard graphics device, the chunk must set the option fig=TRUE. Otherwise, when something calls

Re: [R-pkg-devel] Conversion failure in 'mbcsToSbcs'

Hello: Thank you again for your help. I resubmitted the package (after it passed R CMD check) and it seems there is still an ERROR on the windows builder as shown here: https://win-builder.r-project.org/incoming_pretest/ggenealogy_1.0.3_20240221_121754/Debian/00check.log Error: processing

Re: [Rd] Bug in comparison of language objects?

> Duncan Murdoch > on Tue, 20 Feb 2024 08:47:30 -0500 writes: > On 20/02/2024 8:03 a.m., Duncan Murdoch wrote: >> I noticed the following odd behaviour today: >> >> exprs <- expression( mean(a), mean(b), { a }, { b } ) >> >> exprs[[1]] == exprs[[2]] #> [1]