[Rd] path to rtools not updated in R 4.2.3 - line 1: gcc: command not found

2023-04-04 Thread Patrick Giraudoux
Dear listers, I have update to rtools43 and, using R 4.2.3 I have been surprised not to be able to compile packages needing compilation when updating. Looks like the path given in gcc  -I"C:/PROGRA~1/R/R-42~1.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I"C:/rtools42/x8

[Rd] mrds function integratepdf cannot be found

2020-01-28 Thread Patrick Giraudoux
Hi, Trying to use the function integratepdf of the mrds package, I get this message: |Error in integratepdf(fox.ds$ddf$ds$aux$ddfobj, select = rep(TRUE, nrow(fox.ds$ddf$ds$aux$ddfobj$xmat)), : could not find function "integratepdf" | Has anyone already had this issue ? Maybe the function is n

Re: [Rd] Summary of,all undefined globals

2015-12-22 Thread Patrick Giraudoux
Sorry to have polluted this list with this request. I realized later it was more of the scope of r-package-devel (and that this list do exist). Now moved to r-package-devel Patrick Le 22/12/2015 09:23, Patrick Giraudoux a écrit : Dear Listers, Kurt (subject "CRAN packages maintained b

[Rd] Summary of,all undefined globals

2015-12-22 Thread Patrick Giraudoux
Dear Listers, Kurt (subject "CRAN packages maintained by you" sent on 02/07/2015) was mentionning to package maintainers that "with current versions of r-devel, one can get a convenient summary of all undefined globals" and describing how to get a summary conveniently. Now I am using R 3.2.3

Re: [Rd] Namespace dependency not required

2012-03-18 Thread Patrick Giraudoux
Le 18/03/2012 19:30, Uwe Ligges a écrit : On 18.03.2012 19:27, Patrick Giraudoux wrote: Le 18/03/2012 18:02, Uwe Ligges a écrit : On 18.03.2012 16:08, Patrick Giraudoux wrote: Le 18/03/2012 14:57, Uwe Ligges a écrit : On 18.03.2012 11:21, Patrick Giraudoux wrote: Hi, I am working at

Re: [Rd] Namespace dependency not required

2012-03-18 Thread Patrick Giraudoux
Le 18/03/2012 18:02, Uwe Ligges a écrit : On 18.03.2012 16:08, Patrick Giraudoux wrote: Le 18/03/2012 14:57, Uwe Ligges a écrit : On 18.03.2012 11:21, Patrick Giraudoux wrote: Hi, I am working at adding namespace to my packages, carefully following the doc "Writing R extensions

Re: [Rd] Namespace dependency not required

2012-03-18 Thread Patrick Giraudoux
Le 18/03/2012 14:57, Uwe Ligges a écrit : On 18.03.2012 11:21, Patrick Giraudoux wrote: Hi, I am working at adding namespace to my packages, carefully following the doc "Writing R extensions" and some threads on the web. However I cannot find clear explanation about how to best dea

[Rd] Namespace dependency not required

2012-03-18 Thread Patrick Giraudoux
Hi, I am working at adding namespace to my packages, carefully following the doc "Writing R extensions" and some threads on the web. However I cannot find clear explanation about how to best deal with the import or importFrom functions in the name space. To make it short: To declare dependenci

Re: [Rd] Error in gzfile(file, mode) when checking a package with rcmd check

2011-11-06 Thread Patrick Giraudoux
Le 06/11/2011 20:57, Henrik Bengtsson a écrit : > On Sun, Nov 6, 2011 at 11:27 AM, Duncan Murdoch > wrote: >> On 11-11-06 1:59 PM, Patrick Giraudoux wrote: >>> Le 06/11/2011 19:47, Milan Bouchet-Valat a écrit : >>>> Le dimanche 06 novembre 2011 à 19:31

Re: [Rd] Error in gzfile(file, mode) when checking a package with rcmd check

2011-11-06 Thread Patrick Giraudoux
Le 06/11/2011 19:47, Milan Bouchet-Valat a écrit : Le dimanche 06 novembre 2011 à 19:31 +0100, Patrick Giraudoux a écrit : Means "Mes documents" seems not to be the real cause, but the "On Work" directory. However, replacing "On Work" by "On_work" give

Re: [Rd] Error in gzfile(file, mode) when checking a package with rcmd check

2011-11-06 Thread Patrick Giraudoux
Le 06/11/2011 18:57, Uwe Ligges a écrit : On 06.11.2011 18:46, Patrick Giraudoux wrote: Following Uwe Ligges' instructions (off list) I have updated Duncan Murdoch's toolchain, with no effect. The trouble was solved when I moved the package to a directory with a shorter path (U:\Doc

Re: [Rd] Error in gzfile(file, mode) when checking a package with rcmd check

2011-11-06 Thread Patrick Giraudoux
ver with building or installing, just the checking. In my case, the error comes when building the manual. 2011/10/16 Patrick Giraudoux: Also have just tried to build the package with no preliminary check. The package apparently builds OK, tar.gz as well as binary .zip. Really looks like the error has

Re: [Rd] Error in gzfile(file, mode) when checking a package with rcmd check

2011-10-16 Thread Patrick Giraudoux
since R 2.13.2 has been delivered ? Patrick Le 16/10/2011 11:02, Patrick Giraudoux a écrit : PS: looks like if it has something to do with moving from R 2.13.1 to R 2.13.2, since I cannot even check earlier versions of the pgirmess package that where well checked and compiled under earlier R

Re: [Rd] Error in gzfile(file, mode) when checking a package with rcmd check

2011-10-16 Thread Patrick Giraudoux
PS: looks like if it has something to do with moving from R 2.13.1 to R 2.13.2, since I cannot even check earlier versions of the pgirmess package that where well checked and compiled under earlier R versions. Le 16/10/2011 09:50, Patrick Giraudoux a écrit : Hi, For the first time I have a

[Rd] Error in gzfile(file, mode) when checking a package with rcmd check

2011-10-16 Thread Patrick Giraudoux
Hi, For the first time I have a strange behaviour when checking a package before 'packaging' the code. Looks like a file cannot be read. rcmd check pgirmess * using log directory 'U:/Documents and Settings/pgiraudo/Mes documents/R/pgir_arch/pgirmess_arch/On work/pgirmess.Rcheck' * using R v

Re: [Rd] tag \href not recognised in rd doc

2011-06-13 Thread Patrick Giraudoux
Back from the field, I have been capable to update to R 2.13.0 today. \href is well recognised with this version and package check run OK. Best, Patrick Le 06/06/2011 10:59, Duncan Murdoch a écrit : On 11-06-06 12:41 AM, Patrick Giraudoux wrote: Le 05/06/2011 22:30, Duncan Murdoch a

Re: [Rd] tag \href not recognised in rd doc

2011-06-05 Thread Patrick Giraudoux
hould move to the 2.13.0 ? Patrick On 11-06-05 10:56 AM, Patrick Giraudoux wrote: Hi, I have a trouble trying to use \href in a rd doc. See example below: \references{ \href{http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2702787/}{Vaniscotte A., Pleydell D., Raoul F., Quere J.P., Coeurdass

[Rd] tag \href not recognised in rd doc

2011-06-05 Thread Patrick Giraudoux
Hi, I have a trouble trying to use \href in a rd doc. See example below: \references{ \href{http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2702787/}{Vaniscotte A., Pleydell D., Raoul F., Quere J.P., Coeurdassier M., Delattre P., Li T., Qian W., Takahashi K., Weidmann J.C., Qiu J., Giraudoux P. 2

[Rd] packages update and error: no package called 'lattice',Error: package 'Hmisc could not be loaded; Tinn-R

2010-09-12 Thread Patrick Giraudoux
Dear all, Since some months after updating packages via update.packages(ask='graphics'), sometimes I loose 'lattice', although already installed. At R restart, I get: Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : there is no package called 'lattice' Error: package 'Hmisc' coul

Re: [Rd] "°" not accepted under MacOSX

2010-04-15 Thread Patrick Giraudoux
Prof Brian Ripley a écrit : The subject line is untrue. We recommend in 'Writing R Extensions' that you encode such characters as \u sequences, in this case "\u00b0". However, this is more likely to be a locale problem on the check server, as pgirmess checks out on my Mac. In fact, the

[Rd] "°" not accepted under MacOSX

2010-04-15 Thread Patrick Giraudoux
I am developping a package (pgirmess) that since long does not go through CRAN MacOSX checks, just because I have this command in one of the examples. text(mydata[,3],mydata[,4],paste(round(dirs,0),"°"),cex=0.7) It makes: text(mydata[,3],mydata[,4],paste(round(dirs,0),"+ + + + cleanEx() + na

Re: [Rd] troubles with R CMD check and examples under Ubuntu gutsy

2008-05-05 Thread Patrick Giraudoux
I would suggest the following: 1) remove the directore pgirmess.Rcheck 2) run `R CMD check pgirmess' and see if the error occurs again 3) look at pgirmess.Rcheck/pgirmess/R. Does it contain the three files that I mentioned or the original source files. If the latter, check whether PermTest

Re: [Rd] troubles with R CMD check and examples under Ubuntu gutsy

2008-05-04 Thread Patrick Giraudoux
Berwin A Turlach a écrit : G'day Patrick, On Mon, 05 May 2008 08:15:29 +0200 Patrick Giraudoux <[EMAIL PROTECTED]> wrote: Berwin A Turlach a écrit : But I have compiled R on my boxes myself. How did you install R? >From source or by using the prepackaged Ub

Re: [Rd] troubles with R CMD check and examples under Ubuntu gutsy

2008-05-04 Thread Patrick Giraudoux
Berwin A Turlach a écrit : G'day Patrick On Mon, 05 May 2008 07:02:23 +0200 Patrick Giraudoux <[EMAIL PROTECTED]> wrote: I was used to package pgirmess under Windows with everything OK, but, for the first time, I had a trial this afternoon on Ubuntu 7.10 gutsy (I have a

Re: [Rd] troubles with R CMD check and examples under Ubuntu gutsy

2008-05-04 Thread Patrick Giraudoux
ully (as it was under my own Windows version). I have also checked that PermTest was in the package. So I suppose that it has something to do with Ubuntu... but don't know how to debug this... On Mon, 5 May 2008, Patrick Giraudoux wrote: Dear listers, I was used to package pgirmes

[Rd] troubles with R CMD check and examples under Ubuntu gutsy

2008-05-04 Thread Patrick Giraudoux
Dear listers, I was used to package pgirmess under Windows with everything OK, but, for the first time, I had a trial this afternoon on Ubuntu 7.10 gutsy (I have a double boot computer and work more and more under unix) and R 2.7.0. Everything went OK except this: sudo R CMD check pgirmess .