Re: [R-pkg-devel] Detritus reported by r-hub builder check_for_cran

2022-01-16 Thread Rainer M Krug
Thanks Uwe, I’ll try submission to CRAN beginning of next week. Rainer On 15 Jan 2022 at 00:40:00, Uwe Ligges wrote: > > > On 14.01.2022 15:14, Rainer M Krug wrote: > > Hi > > > I want to re-submit an archived package to CRAN, and I get, when checking > > on h

[R-pkg-devel] Detritus reported by r-hub builder check_for_cran

2022-01-14 Thread Rainer M Krug
that is not relevant. — Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: -0002-7490-0066 Department of Evolutionary Biology and Environmental Studies University of Zürich Office Y34-J-74 Winterthurerstrasse 190 8075 Zürich

Re: [R-pkg-devel] Pre-test check fails with "non-standard things in check directory" on one platform

2021-09-02 Thread Rainer M Krug
> On 2 Sep 2021, at 14:02, Duncan Murdoch wrote: > > On 02/09/2021 6:29 a.m., Rainer M Krug wrote: >> Hi >> I submitted an update of the dmdScheme package and got the response back >> from the pre-submission check that it failed on one platform with the Note: >

[R-pkg-devel] Pre-test check fails with "non-standard things in check directory" on one platform

2021-09-02 Thread Rainer M Krug
omebody give any guidance, how to fix this? Which one is the “check directory"? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: -0002-7490-0066 Department of Evolutionary Biology and Environmental S

Re: [R-pkg-devel] CRAN, API packages, Keys and tests

2020-09-07 Thread Rainer M Krug
r/tests/test_getSymbols.R#L4 >> >> Best, >> Josh >> >> On Fri, Sep 4, 2020 at 3:25 AM Rainer M Krug wrote: >>> >>> I know this has been asked a few times - but I can’t find anything which >>> might help me. >>> >>> I ha

[R-pkg-devel] CRAN, API packages, Keys and tests

2020-09-04 Thread Rainer M Krug
on remote machines. My question is: 1) I have disabled all tests and all examples if there is no environmental variable set with the API Key - is this OK for CRAN? 2) If not, how can I make this CRAN compliant? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc

Re: [R-pkg-devel] Proper CRAN way - How to handle dependency of java jar file?

2020-07-13 Thread Rainer M Krug
s) > Phone number : +33.6.30.97.34.27 > Research topics: population genetics, landscape ecology, graph theory, > spatial statistics > > - Mail original - > De: "Rainer M Krug" > À: "Maëlle SALMON" > Cc: "r-package-devel" > Envoyé: Lu

Re: [R-pkg-devel] Proper CRAN way - How to handle dependency of java jar file?

2020-07-13 Thread Rainer M Krug
rs package, the hoardr > package) cf > https://blog.r-hub.io/2020/03/12/user-preferences/#not-so-temporary-files3 > > Maëlle. > > Den tisdag 23 juni 2020 14:56:30 CEST, Rainer M Krug skrev: > > > > > > Thanks Duncan. > >> On 23 Jun 2020, at 1

Re: [R-pkg-devel] Making possible the use of external java codes by downloading it

2020-07-03 Thread Rainer M Krug
with "rappdirs::user_data_dir()". > > Do you know how to check if java is installed on their machine? > > I thought about using something like that: > > jv <- system2("java", args = c("-version")) > if(jv != 0){ > stop("You hav

Re: [R-pkg-devel] Making possible the use of external java codes by downloading it

2020-07-03 Thread Rainer M Krug
> R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: -0002-7490-0066 Department of Evolutionary Biology

Re: [R-pkg-devel] [EXTERNAL] Proper CRAN way - How to handle dependency of java jar file?

2020-06-23 Thread Rainer M Krug
Perfect. You also mention the “backports” package - how can I use that one to be able to also support old versions of R? Thanks, Rainer > On 23 Jun 2020, at 16:34, Hong Ooi wrote: > > Yes, that’s the one. > > From: Rainer M Krug > Sent: Tuesday, 23 June 2020 11:12

Re: [R-pkg-devel] [EXTERNAL] Proper CRAN way - How to handle dependency of java jar file?

2020-06-23 Thread Rainer M Krug
config/user dir. This is > available via R_user_dir() in R 4.0 (and earlier versions via the backports > package). An older alternative that still works is to use the rappdirs > package. > > > -Original Message- > From: R-package-devel On Behalf Of > Rainer

Re: [R-pkg-devel] Proper CRAN way - How to handle dependency of java jar file?

2020-06-23 Thread Rainer M Krug
the jar file into that directory or, when no permission is granted, into the tmpdir() Thanks, no major changes necessary for that, Rainer > > Duncan Murdoch > > On 23/06/2020 8:18 a.m., Rainer M Krug wrote: >> Hi >> I have a package called `plantuml` (https://github.com/rkrug/

[R-pkg-devel] Proper CRAN way - How to handle dependency of java jar file?

2020-06-23 Thread Rainer M Krug
is doing stuff. Any suggestions on how I could make this “CRAN conform”? Thanks a lot, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: -0002-7490-0066 Department of Evolutionary Biology and Environmental Studies Unive

Re: [R-pkg-devel] Strange leftovers after check by CRAN

2020-03-20 Thread Rainer M Krug
gt; >> >> >> ____ >> From: R-package-devel >> <mailto:r-package-devel-boun...@r-project.org> on behalf of Rainer M Krug >> <mailto:rai...@krugs.de> >> Sent: March 19, 2020 11:21:08 AM >&

Re: [R-pkg-devel] Strange leftovers after check by CRAN

2020-03-19 Thread Rainer M Krug
r > > Best, > Kevin > > On Thu, Mar 19, 2020 at 9:21 AM Rainer M Krug wrote: >> >> Hi >> >> My package dmdScheme gets always one note after submission to CRAN: >> >> >> ... >> * checking for detritus in

[R-pkg-devel] Strange leftovers after check by CRAN

2020-03-19 Thread Rainer M Krug
... OK * DONE Any suggestions how I can track down the where these are coming from? Each time my package has to go through a manual check at CRAN… Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: -0002-7490

Re: [R-pkg-devel] R CMD build hanging for some but not all packages

2020-02-12 Thread Rainer M Krug
ng like file.copy( setdiff(list.files(recursive=TRUE)), >> scan(".Rbuildignore", what=character())), to = destdir) ? >> >> On 2020-02-11 8:50 a.m., Rainer Krug wrote: >>> Thinking about it - what would be the easiest way, to copy the package, >>> excluding

Re: [R-pkg-devel] [EXTERNAL] R CMD build hanging for some but not all packages

2020-02-11 Thread Rainer M Krug
probably because R CMD build does something like cp * to > copy everything to a temp folder first up, before processing it. An argument > could be made that it should manually loop through all files and dirs, > checking each against .Rbuildignore before copying. > > > From: Rain

Re: [R-pkg-devel] R CMD build hanging for some but not all packages

2020-02-11 Thread Rainer M Krug
> On 11 Feb 2020, at 09:54, Gábor Csárdi wrote: > > On Tue, Feb 11, 2020 at 8:52 AM Rainer M Krug wrote: >> On 11 Feb 2020, at 09:42, Gábor Csárdi wrote: >> On Tue, Feb 11, 2020 at 8:38 AM Rainer M Krug wrote: >> On 10 Feb 2020, at 17:58, Gábor Csárdi wrote:

Re: [R-pkg-devel] R CMD build hanging for some but not all packages

2020-02-11 Thread Rainer M Krug
> On 11 Feb 2020, at 09:42, Gábor Csárdi wrote: > > On Tue, Feb 11, 2020 at 8:38 AM Rainer M Krug <mailto:rai...@krugs.de>> wrote: >> >> >> >> On 10 Feb 2020, at 17:58, Gábor Csárdi wrote: >> >> Maybe you have large, ignored fil

Re: [R-pkg-devel] R CMD build hanging for some but not all packages

2020-02-11 Thread Rainer M Krug
LyjnmqSB96PiIxIh9N2p%2Ft4%3Dreserved=0 >> >> __ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel > > __ > R-package-devel@r

Re: [R-pkg-devel] Proper way to ask a user to set permanent variables?

2020-01-17 Thread Rainer M Krug
> R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: -0002-7490-0066 Department of Evolutionary Biology and Environmental Studi

Re: [R-pkg-devel] Proper way to ask a user to set permanent variables?

2020-01-14 Thread Rainer M Krug
workspace-type saves since I feel like that often results in >> a ton of variables being saved. >> >> Thanks! >> >> --j >> >>[[alternative HTML version deleted]] >> >> __________ >> R-pack

Re: [R-pkg-devel] DOI in of package in DESCRIPTION file

2019-12-16 Thread Rainer M Krug
more than > asking him to perform a post-mortem examination: he may be able to say what > the experiment died of. - Ronald Fisher > > On Mon, Dec 16, 2019 at 9:43 AM Rainer M Krug <mailto:rai...@krugs.de>> wrote: > Hi > > UI am preparing my package for CRAN. I have

Re: [R-pkg-devel] DOI in of package in DESCRIPTION file

2019-12-16 Thread Rainer M Krug
Thanks Uwe, I will do so. Rainer > On 16 Dec 2019, at 15:56, Uwe Ligges wrote: > > > > On 16.12.2019 15:34, Rainer M Krug wrote: >> Hi >> UI am preparing my package for CRAN. I have a DOI for my package, and would >> like to add Ito the DESCRIPTION fi

[R-pkg-devel] DOI in of package in DESCRIPTION file

2019-12-16 Thread Rainer M Krug
field. Is there a recommended way, of adding the DOI of a package to the DESCRIPTION file? I did not find anything when googling. Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: -0002-7490-0066

Re: [R-pkg-devel] CRAN submission with "possibly unsafe calls" or alternative approach?

2019-12-06 Thread Rainer M Krug
ple who know the details > much better than I do). > > I seem to recall that people have come up with ways to set up an environment > which can contain mutable objects of this sort. > > -pd > >> On 6 Dec 2019, at 10:05 , Rainer M Krug wrote: >> >> Hi >&

Re: [R-pkg-devel] Package write access for storing new files

2019-12-06 Thread Rainer M Krug
ad directory. But for CRAN I believe you will need to obtain some kind > of user confirmation at least once to allow this behaviour. Best, Greg. > > Sent from my iPhone > >> On 6 Dec 2019, at 08:43, Rainer M Krug wrote: >> >> Hi >> >> I am wri

[R-pkg-devel] CRAN submission with "possibly unsafe calls" or alternative approach?

2019-12-06 Thread Rainer M Krug
ames(dmdScheme) [1] "Experiment" "Genus""Treatments" "Measurement" [5] "DataExtraction" "DataFileMetaData" > names(dmdScheme::dmdScheme) NULL > ``` Is there a way, that I can change the value of dmdScheme:

[R-pkg-devel] Package write access for storing new files

2019-12-06 Thread Rainer M Krug
cate things. Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Orcid ID: -0002-7490-0066 Department of Evolutionary Biology and Environmental Studies University of Zürich Office Y34-J-74 Winterthurerstrasse 190 807

Re: [R-pkg-devel] Package dependency graphs of packages in development (local)

2019-05-09 Thread Rainer M Krug
ee above). Rainer ``` > On 9 May 2019, at 13:16, Gábor Csárdi wrote: > > It fails to download package metadata. Maybe your internet access is > restricted? > > Gabor > > On Thu, May 9, 2019 at 12:12 PM Rainer M Krug wrote: >> >> But I don’t get it to run. >

Re: [R-pkg-devel] Package dependency graphs of packages in development (local)

2019-05-09 Thread Rainer M Krug
ot;" > #> 5 r-lib/crancache Imports crancache >=0.0.0.9001 > #> 6 crayon Imports crayon """" > #> 7 DBI Imports DBI """" > #> 8 descImports desc >=1.1.1.900

[R-pkg-devel] Package dependency graphs of packages in development (local)

2019-05-09 Thread Rainer M Krug
(but on GitHub and a drat repo), and I would like to look at the package dependencies BEFORE submitting to CRAN. Is there a tool which allows me to plot a dependency graph for my local package? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl

Re: [R-pkg-devel] Checking for future file timestamps - warning with worldclockapi HTTP status 403 Site Disabled

2019-03-19 Thread Rainer M Krug
k.R#L457 > > G. > > On Tue, Mar 19, 2019 at 11:11 AM Rainer M Krug wrote: >> >> Can anyone confirm if this has been fixed? I would like to remove the >> _R_CHECK_SYSTEM_CLOCK_=0 but would like to know in advance. >> >> Thanks >> >> Rainer

Re: [R-pkg-devel] Checking for future file timestamps - warning with worldclockapi HTTP status 403 Site Disabled

2019-03-19 Thread Rainer M Krug
xed" may be more appropro since it's not >>> in SVN logs, Bugzilla nor noted prominently in any of the various NEWS* >>> files. >>>>>>> >>>>>>> Then there's the "why was the core R installation using a third >>> part

Re: [R-pkg-devel] Checking for future file timestamps - warning with worldclockapi HTTP status 403 Site Disabled

2019-03-07 Thread Rainer M Krug
ailto: ralf.her...@mailbox.org [S/MIME] > ## https://paediatricdata.eu/ > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Rainer M. Krug email: Rainerkrugsde PGP: 0x0F52F982

Re: [Rd] Runnable R packages

2019-02-08 Thread Rainer M Krug
;>> But feel free to correct me if you think that I'm wrong. >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> __ >>>> R-devel@r-project.org mailing list >>>> https://stat.ethz.ch/mailman/listinfo/r-devel >

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-11 Thread Rainer M Krug
> been a build in the past 24 hours. That solves the problem adequately > for my purposes without adding any burden to CRAN. Hopefully it works > for your purposes too. I haven’t thought about the CRON job for TravisCI - good point. I will activate it straight away. Thanks, Rainer > >

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-06 Thread Rainer M Krug
>>>>>>> >>>>>>> >>>>>>> >>>>>>> On 05.09.2018 09:28, Rainer Krug wrote: >>>>>>>> Hi >>>>>>>> I have a package at GitHub (https://github.com/rkrug/ROriginStamp) >>>>&

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-05 Thread Rainer M Krug
gt;> My question: >> Is there a way of storing the API key encrypted, so that only the CRAN test >> servers can decrypt it, or is there another way can steal with this? >> Thanks, >> Rainer >> -- >> Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation

Re: [R-pkg-devel] Building my R package: issue when importing two functions with the same name

2018-08-07 Thread Rainer M Krug
t;> >>> (starting from 3rd September 2018) >>> Lecturer in Spatial Forensics >>> Department of Criminology >>> Faculty for Social Wellbeing >>> University of Malta >>> https://www.researchgate.net/profile/Gianmarco_Alberti4 >>> http://cain

Re: [R-pkg-devel] plot graph (png, svg, eps, pdf, vdx, ok tikz) to device

2018-05-15 Thread Rainer M. Krug
call to plantuml) directly >> into the device (or through any function) without having to create an >> intermediate file? >> >> >> >> Thanks for any [pointers, >> >> Rainer >> >> >> -- >> Rainer M. Krug, PhD (Co

Re: [R-pkg-devel] plot graph (png, svg, eps, pdf, vdx, ok tikz) to device

2018-05-15 Thread Rainer M Krug
r format. > > My question is therefore: > > • Is there a way to display any of the vector formats in a graphics > device in R? > • Can I pipe stdout (the result from the call to plantuml) directly > into the device (or through any function) without having t

Re: [Rd] Warn on partial matches in R CMD check

2016-01-21 Thread Rainer M Krug
ault (because > sometimes the warnings come from other packages), but it would be > really convenient to have as a switch. and also possibly to enable this for normal running of code outside of packages. Cheers, Rainer > > Hadley -- Rainer M. Krug email: Rainerkrugsd

[R-pkg-devel] Adding non-exported functions in an extra environment in new S4 object

2016-01-21 Thread Rainer M Krug
ion executed by the sim() function, which attaches the equations environment at the beginning and detaches it at the end. This enables me to have different simulation objects with different functions. Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UC

Re: [R-pkg-devel] Build fails on Mavericks

2015-11-19 Thread Rainer M Krug
uch like homebrew. If yes, try installing readline From homebrew. Cheers, Rainer > > Duncan Murdoch > > ______ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Rainer M. Krug, PhD (Conservation Ecolog

Re: [Rd] R CMD BATCH vs R CMD batch

2015-10-29 Thread Rainer M Krug
ormation about R | javareconf Update the Java configuration variables | rtags Create Emacs-style tag files from C, R, and Rd files ` Unless I miss something, is this is an inconsistency in R? Rainer > > Dirk -- Rainer M. Krug, PhD (Conservation Ecology

Re: [Rd] R CMD BATCH vs R CMD batch

2015-10-29 Thread Rainer M Krug
Deepayan Sarkar <deepayan.sar...@gmail.com> writes: > On Thu, Oct 29, 2015 at 2:09 PM, Rainer M Krug <rai...@krugs.de> wrote: >> Dirk Eddelbuettel <e...@debian.org> writes: >> >>> On 28 October 2015 at 21:39, Marius Hofert wrote: >>> | Out of l

Re: [Rd] R CMD BATCH vs R CMD batch

2015-10-29 Thread Rainer M Krug
peter dalgaard <pda...@gmail.com> writes: > On 29 Oct 2015, at 10:44 , Rainer M Krug <rai...@krugs.de> wrote: > >> Out of interest: What is the magic ~R CMD~ is doing? Is it documented >> anywhere? > > > R is open source (and shell scripts are consid

Re: [Rd] MetaCran website v1.0.0-alpha

2015-05-24 Thread Rainer M Krug
HTML version deleted]] -- Rainer M. Krug email: Raineratkrugsdotde PGP: 0x0F52F982 signature.asc Description: PGP signature __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] update.packages with ask = FALSE will sometimes ask about updates

2015-02-11 Thread Rainer M Krug
it now, option 4 with warning should be the way to go. Cheers, Rainer -- Rainer M. Krug email: Raineratkrugsdotde PGP: 0x0F52F982 signature.asc Description: PGP signature __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r

[Rd] Access variable in attached but removed object

2014-05-09 Thread Rainer M Krug
) test # 13 test - 24 test # 24 ls(all=TRUE) # character(0) # # how can I access the variable test in the object org:variables in the # search path? # rm(test) test # 13 --8---cut here---end---8--- Any suggestions? Thanks, Rainer -- Rainer M. Krug, PhD

Re: [Rd] Access variable in attached but removed object

2014-05-09 Thread Rainer M Krug
Duncan Murdoch murdoch.dun...@gmail.com writes: On 09/05/2014, 6:54 AM, Rainer M Krug wrote: How can I access an object in an attached but deleted environment, when the object also exists in the .GolbalEnv? Attaching a variable to the search list generally makes a copy of it, so it can't

[Rd] creating namespaces outside packages

2014-03-28 Thread Rainer M Krug
with an environment? Thanks, Rainer Footnotes: [1] http://r.789695.n4.nabble.com/create-namespace-without-creating-a-package-td3485968.html -- Rainer M. Krug email: Raineratkrugsdotde PGP: 0x0F52F982 pgpSpia44kJmE.pgp Description: PGP signature

[Rd] SOLVED: creating namespaces outside packages

2014-03-28 Thread Rainer M Krug
Duncan Murdoch murdoch.dun...@gmail.com writes: On 28/03/2014, 7:01 AM, Rainer M Krug wrote: Hi I would like to use namespaces outside packages, but I could not find any references on how to do it (only a thread [1] which says use a package). Using a package is not possible in my case, as I

Re: [Rd] Docker versus Vagrant for reproducability - was: The case for freezing CRAN

2014-03-24 Thread Rainer M Krug
/running_ssh_service/ -- Rainer M. Krug email: Raineratkrugsdotde PGP: 0x0F52F982 pgpECO52k0Gfp.pgp Description: PGP signature __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Docker versus Vagrant for reproducability - was: The case for freezing CRAN

2014-03-24 Thread Rainer M Krug
Forgot: My Dockerfiloe is on github: https://github.com/rkrug/R-docker Rainer M Krug rai...@krugs.de writes: Thanks everybody for their input - interesting suggestions and useful information - thanks. But I am still struggling to use this information. What I got so far: 1) I have decided

Re: [Rd] [RFC] A case for freezing CRAN

2014-03-21 Thread Rainer M Krug
archiving to make it possible to re-run the simulation with the same tools at a later stage - although guarantees would not be possible. Cheers, Rainer -- Rainer M. Krug email: Raineratkrugsdotde PGP: 0x0F52F982 __ R-devel@r-project.org mailing list https

Re: [Rd] [RFC] A case for freezing CRAN

2014-03-21 Thread Rainer M Krug
or format of the output does not change) are merged to the CRAN release branch. This policy was adopted because it fits the current CRAN policy, and probably would need to change if CRAN policy changes. Cheers, Jari Oksanen -- Rainer M. Krug email: Raineratkrugsdotde PGP: 0x0F52F982

[Rd] Docker versus Vagrant for reproducability - was: The case for freezing CRAN

2014-03-21 Thread Rainer M Krug
these questions in the light of this discussion of reproducability and not in regards to deployment of applications what the discussions on the web are. Any comments, thoughts, remarks? Rainer Footnotes: [1] http://docs.docker.io/en/latest/installation/mac/ -- Rainer M. Krug email

Re: [Rd] [RFC] A case for freezing CRAN

2014-03-21 Thread Rainer M Krug
Jari Oksanen jari.oksa...@oulu.fi writes: On 21/03/2014, at 10:40 AM, Rainer M Krug wrote: This is a long and (mainly) interesting discussion, which is fanning out in many different directions, and I think many are not that relevant to the OP's suggestion. I see the advantages

Re: [Rd] Docker versus Vagrant for reproducability - was: The case for freezing CRAN

2014-03-21 Thread Rainer M Krug
, Belgium ( ( ( ( ( .. On 21 Mar 2014, at 10:59, Rainer M Krug rai...@krugs.de wrote: Dirk Eddelbuettel e...@debian.org writes: o Roger correctly notes that R scripts and packages are just one issue. Compilers, libraries

Re: [Rd] [RFC] A case for freezing CRAN

2014-03-20 Thread Rainer M Krug
it Auditability and care very much as well :-) [[alternative HTML version deleted]] -- Rainer M. Krug email: Raineratkrugsdotde PGP: 0x0F52F982 pgp0EotWauDSe.pgp Description: PGP signature __ R-devel@r-project.org mailing list https

Re: [Rd] [RFC] A case for freezing CRAN

2014-03-20 Thread Rainer M Krug
so that all packages (with the specified version) required can be installed with one command, and I think the problem would be much closer to be solved. Rainer Hadley -- Rainer M. Krug email: Raineratkrugsdotde PGP: 0x0F52F982 pgpfAhwo1bQBT.pgp Description: PGP signature

Re: [Rd] Question re: NA, NaNs in R

2014-02-10 Thread Rainer M Krug
__ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10

Re: [Rd] Creating Namespace and locking it during runtime?

2014-01-23 Thread Rainer M Krug
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Thanks - looks very promising. Rainer On 01/23/14, 09:23 , Prof Brian Ripley wrote: See ?lockEnvironment, which ??lock shows as ?bindenv . On 22/01/2014 20:52, Rainer M Krug wrote: Hi I would like to create a Namespace during runtime

[Rd] Creating Namespace and locking it during runtime?

2014-01-22 Thread Rainer M Krug
, but will be source()ed. Next step: pass variables from org mode / emacs to R and to protect these variables from accidental change / removal. Any suggestions on how to do this? Cheers, Rainer - -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys

[Rd] SOLVED: check warning with .onLoad() and setClass()

2013-10-07 Thread Rainer M Krug
. While you haven't defined didn't work, an off-the-top-of-the-head idea would be something like: setLoadActions(function(ns) {setClass(., where = ns)}) On Oct 4, 2013, at 7:07 AM, Rainer M Krug rai...@krugs.de wrote: Dirk Eddelbuettel e...@debian.org writes: On 4 October 2013

[Rd] search for variable in package in .GlobalEnv first

2013-10-07 Thread Rainer M Krug
:: for the variable TYPE. How can do this? Thanks, Rainer -- Rainer M. Krug email: RMKrugatgmaildotcom pgpFvdLZpRyLG.pgp Description: PGP signature __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] SOLVED: search for variable in package in .GlobalEnv first

2013-10-07 Thread Rainer M Krug
Duncan Murdoch murdoch.dun...@gmail.com writes: On 07/10/2013 10:29 AM, Rainer M Krug wrote: Hi First, sorry if I get the terminology wrong, I am still quite new to the concept of using environments and workspaces. Say I have a statement in a package SIM like sim - TYPE where

Re: [Rd] check warning with .onLoad() and setClass()

2013-10-04 Thread Rainer M Krug
the Rcpp package, which uses this to set up load-time C++ linkages. John Chambers On Oct 3, 2013, at 3:22 AM, Rainer M Krug rai...@krugs.de wrote: Hi I am writing a package in which I define a new class in the .onLoad() hook: , | .onLoad - function(libname, pkgname) { | setClass

Re: [Rd] check warning with .onLoad() and setClass()

2013-10-04 Thread Rainer M Krug
Dirk Eddelbuettel e...@debian.org writes: On 4 October 2013 at 12:59, Rainer M Krug wrote: | Thanks John | | that is likely the solution to my problem, but I don't understand | how I | can use it and I can't find the example in the Rcpp package (I did | grep | for setLoadAtion

Re: [Rd] check warning with .onLoad() and setClass()

2013-10-04 Thread Rainer M Krug
Dirk Eddelbuettel e...@debian.org writes: On 4 October 2013 at 14:15, Rainer M Krug wrote: | Hm. loadModule is Rcpp function, but I am only interested in using the | setClass() function, which has nothing to do with Rcpp. I don't even use | Rcpp in the package, only in one which is imported

[Rd] check warning with .onLoad() and setClass()

2013-10-03 Thread Rainer M Krug
| ) | } ` The class simObj is defined in the package, which is in the depends section in the DESCRIPTION file: , | Package: InDrak | Type: Package | Title: Alien spread management simulation model for the Drakensberg | Version: 0.1-0 | Date: 2013-10-03_11-55 | Author: Rainer M. Krug | Maintainer: Rainer

Re: [Rd] ASCII art in function documentation - difference html and text output?

2013-09-05 Thread Rainer M Krug
- is there a bug somewhere? Thanks, Rainer Rainer M Krug rai...@krugs.de writes: Sarah Goslee sarah.gos...@gmail.com writes: Untested, but did you try wrapping the whole thing in a single code block: Nope - also in one line. Rainer \code{ all the things } Sarah On Thu, Sep 5, 2013 at 10:10

[Rd] ASCII art in function documentation?

2013-09-05 Thread Rainer M Krug
|' | | '+--+--+--+' ` and when no empty lines were included obviously put everything behind each other. My question: Is there a way that I can achieve the ASCII art as shown above? Is there a way of having a \linebreak which does not insert a new line? Thanks, Rainer -- Rainer M. Krug email

Re: [Rd] ASCII art in function documentation?

2013-09-05 Thread Rainer M Krug
. Sarah On Thu, Sep 5, 2013 at 11:10 AM, Rainer M Krug rai...@krugs.de wrote: Sarah Goslee sarah.gos...@gmail.com writes: Untested, but did you try wrapping the whole thing in a single code block: Nope - also in one line. Rainer \code{ all the things } Sarah On Thu, Sep 5, 2013

Re: [Rd] ASCII art in function documentation?

2013-09-05 Thread Rainer M Krug
Sarah Goslee sarah.gos...@gmail.com writes: Untested, but did you try wrapping the whole thing in a single code block: Nope - also in one line. Rainer \code{ all the things } Sarah On Thu, Sep 5, 2013 at 10:10 AM, Rainer M Krug rai...@krugs.de wrote: Hi I want to include ascii

Re: [Rd] ASCII art in function documentation?

2013-09-05 Thread Rainer M Krug
Brian G. Peterson br...@braverock.com writes: On 09/05/2013 09:10 AM, Rainer M Krug wrote: want to include ascii art in a function documentation which should look as follow: , | +--+--+--+ | | 1/16 | 1/16 | 1/16 | | +--+--+--+ | | 1/16 | 8/16 | 1/16

[Rd] Perplexed with environment

2013-06-25 Thread Rainer M Krug
something really basic wrong? A copy of the package is available at: https://www.dropbox.com/s/hv6abepcczrljum/logger_0.0-1.tar.gz Thanks, Rainer PS: I am planning to making it available when it is working (again) -- Rainer M. Krug email: RMKrugatgmaildotcom pgp_a9eqrII9M.pgp Description: PGP

Re: [Rd] ess completion

2013-03-22 Thread Rainer M Krug
- -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27 44 Fax

Re: [Rd] Deprecating partial matching in $.data.frame

2013-03-21 Thread Rainer M Krug
time to figure out, caused by partial completion and would very much like to see it go (or at least have the option to show warnings if it occurs). Cheers, Rainer Hadley - -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany

Re: [Rd] requesting a new SIG mailing list

2012-02-14 Thread Rainer M Krug
) is mainly spatial. A fragmentation of the lists would need to duplicate effort by members. Cheers, Rainer Thanks in advance, Mauricio Zambrano-Bigiarini - -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence

Re: [Rd] [R] Version control (git, mercurial) for R packages

2012-02-13 Thread Rainer M Krug
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/02/12 22:05, Davor Cubranic wrote: On February 10, 2012 09:11:35 AM Rainer M Krug wrote: But what I was thinking about (in my other post as well) is to include github (or any other git repo provider) into r-forge for the automatic creation

Re: [Rd] [R] Version control (git, mercurial) for R packages

2012-02-10 Thread Rainer M Krug
. This requires a working R development environment but thanks to the hard work of Simon Urbanek, Duncan Murdoch, Brian Ripley and others, this is a one-install process on all major platforms. True - no problem for developers. Cheers, Rainer Hadley - -- Rainer M. Krug, PhD (Conservation

Re: [Rd] bug in rank(), order(), is.unsorted() on character vector

2011-12-07 Thread Rainer M Krug
Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fhcrc.org Phone: (206) 667-5791 Fax:(206) 667-1319 __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel - -- Rainer M. Krug

Re: [Rd] Case: package removed from CRAN, but not orphaned

2011-11-25 Thread Rainer M Krug
://stat.ethz.ch/mailman/**listinfo/r-develhttps://stat.ethz.ch/mailman/listinfo/r-devel -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0

[Rd] Error in documentation of merge

2011-11-04 Thread Rainer M Krug
= L’. The L should be a T or a TRUE. Cheers, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0

Re: [Rd] Error in documentation of merge

2011-11-04 Thread Rainer M Krug
On Fri, Nov 4, 2011 at 1:20 PM, peter dalgaard pda...@gmail.com wrote: On Nov 4, 2011, at 13:11 , Rainer M Krug wrote: Hi there seems to be an error in the documentation of the merge function: Arguments: x, y: data frames, or objects to be coerced to one. by, by.x, by.y

Re: [Rd] RFC: 'igraph' package update and backward compatibility

2011-10-20 Thread Rainer M Krug
/listinfo/r-devel -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax (F): +33

Re: [Rd] RFC: 'igraph' package update and backward compatibility

2011-10-20 Thread Rainer M Krug
Sorry - not iplot, but igraph. On Thu, Oct 20, 2011 at 9:21 AM, Rainer M Krug r.m.k...@gmail.com wrote: On Wed, Oct 19, 2011 at 8:05 PM, Gábor Csárdi csa...@rmki.kfki.hu wrote: Dear R developers, I am seeking advice on some $subject matter. My package will have an update soon

Re: [Rd] Finding inter-function dependencies within a package

2011-09-29 Thread Rainer M Krug
__ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9

[Rd] Usage of options() for user defined options

2011-08-05 Thread Rainer M Krug
Hi I want to use options() to store session wide options - is that a reasonable approach, or should options() be reserved for core options? Thanks Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence

Re: [Rd] Rf_errorcall - translate to Pascal

2006-02-16 Thread Rainer M Krug
in the analysis of simulations from Delphi. Rainer -- -- Rainer M. Krug, Dipl. Phys. (Germany), MSc Conservation Biology (UCT) Department of Conservation Ecology University of Stellenbosch Matieland 7602 South Africa email:[EMAIL PROTECTED] __ R

[Rd] How to uninstall R when installed with make install

2005-10-25 Thread Rainer M. Krug
Hi How can I uninstall R when I installed it with make install? Thanks, Rainer -- NEW TELEPHONE NUMBER Tel:+27 - (0)72 808 2975 (w) Rainer M. Krug, Dipl. Phys. (Germany), MSc Conservation Biology (UCT) Department of Conservation Ecology University of Stellenbosch Matieland 7602

Re: [Rd] Socks under R

2005-10-20 Thread Rainer M. Krug
That's brilliant! Thanks a lot for your help, Rainer Simon Urbanek wrote: Rainer, On Oct 19, 2005, at 3:29 PM, Rainer M. Krug wrote: when I use con1 - socketConnection(...) in R and want to send text from another application written in Delphi to R, do I just have to send the text

[Rd] Control R from another program (written in Delphi)

2005-10-17 Thread Rainer M. Krug
Cluster, thits is not an option any more. What is the easiest way of copntrolluing R over the network? I thought about sockets, but I am a little bit stuck. Any tips welcome, Rainer -- NEW TELEPHONE NUMBER Tel:+27 - (0)72 808 2975 (w) Rainer M. Krug, Dipl. Phys. (Germany), MSc

Re: [Rd] Compilation of R-2.2.0 under SUSE 10

2005-10-14 Thread Rainer M Krug
Could you give me a hint what I should look for? I am quite new to Linux. Rainer On Friday 14 October 2005 14:19, Peter Dalgaard wrote: Rainer M Krug [EMAIL PROTECTED] writes: Hi I hope this is the right list for the question. I want to install R from source under SUSE 10. When

Re: [Rd] Compilation of R-2.2.0 under SUSE 10

2005-10-14 Thread Rainer M Krug
(gccfortran) and it worked. Thanks a lot for your help Peter Rainer On Friday 14 October 2005 15:30, Peter Dalgaard wrote: Rainer M Krug [EMAIL PROTECTED] writes: Could you give me a hint what I should look for? I am quite new to Linux. Rainer As long as you can see where it goes wrong

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