Re: [Rd] R Bug: write.table for matrix of more than 2, 147, 483, 648 elements

2018-04-18 Thread Steven McKinney
end = TRUE, ) for the next chunk of rows, looping over chunks until done. Two chunks will get your 2.8 billion entries done. Best Steve Steven McKinney, Ph.D. Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre > -Original Message-

[Rd] R-3.0.3 tar file not on Sources page

2014-03-13 Thread Steven McKinney
this, for an update to the Sources page? Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Bioc-devel] simple question about floor

2013-12-19 Thread Steven McKinney
] 28.99644729 floor(28.99) [1] 28. floor(29.00) [1] 29. Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre -Original Message- From: bioc-devel-boun...@r-project.org

Re: [Rd] Two R editiosn in Unix cluster systems

2013-10-15 Thread Steven McKinney
. Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre Here's my guess First, The RPM packages need unique names, of course. Second, leave the RPM packaging for R-newest exactly the same as it always was. R is in the path, the R

Re: [Rd] F statistic in add1.lm vs add1.glm

2013-06-25 Thread Steven McKinney
)) Is this where the double division is happening? diff has df in the denominator, then Fs assignment sees diff divided by df again. if df is 1, the double division will go unnoticed. Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre

Re: [Rd] Depreciating partial matching

2013-03-21 Thread Steven McKinney
to that! But it is not working at present. The link above points to the development version ess-13 which I downloaded using svn export (I got version 13.03, running on a Mac with emacs 24.3). Completion of object names works in the inferior ESS buffer but not yet in an ESS buffer ( .R file). Steven McKinney

Re: [Rd] nobs() with glm(family=poisson)

2013-02-27 Thread Steven McKinney
random sampling but the sampling design is less efficient, then n should be reduced to reflect the efficiency of the sampling design relative to simple random sampling. Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre

Re: [Rd] seq.Date bug?

2012-01-31 Thread Steven McKinney
-2012 30-Apr-2012 31-May-2012 [7] 30-Jun-2012 31-Jul-2012 31-Aug-2012 30-Sep-2012 31-Oct-2012 30-Nov-2012 ... though leap seconds might require a bit more tweaking... Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre Jeff

[Rd] png cairo device problems on Mac 10.6.8

2012-01-18 Thread Steven McKinney
base loaded via a namespace (and not attached): [1] tools_2.14.1 Steven McKinney, Ph.D. Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney +at+ bccrc +dot+ ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th

Re: [Rd] png cairo device problems on Mac 10.6.8

2012-01-18 Thread Steven McKinney
-Original Message- From: Simon Urbanek [mailto:simon.urba...@r-project.org] Sent: January-18-12 3:10 PM To: Steven McKinney Cc: R-devel@r-project.org Subject: Re: [Rd] png cairo device problems on Mac 10.6.8 On Jan 18, 2012, at 5:22 PM, Steven McKinney wrote: Hi all

Re: [Rd] Error in documentation of merge

2011-11-04 Thread Steven McKinney
since it seems that several people have been confused, for example by writing out 'logical' instead of 'L'. Seconded, as L does have another use as well now in numeric constants 1L [1] 1 Steven McKinney Kasper __ R-devel@r-project.org

Re: [Rd] Testing window for R 2.13.0

2011-03-18 Thread Steven McKinney
are implemented, and patched versions released by this open source group (this includes Bioconductor and many of the package maintainers). No commercial vendor that I know of can or will match this response. Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia

Re: [Rd] Request: Suggestions for good teaching packages, esp. with C code

2011-02-15 Thread Steven McKinney
f0 - function() { b - 5 return( list( a = b ) ) } f0() $a [1] 5 Steven McKinney f2- function(){ return(a=5) } This is a mistake: return() doesn't take named arguments. It is lenient and lets you get away with this error (treating it the same as return(5

Re: [Rd] use of depends, suggests, etc

2011-01-27 Thread Steven McKinney
If you add the other package to Suggests, what problems do you see? Adding the other package to Suggests seems most appropriate, your use case seems very similar to packages discussed in a vignette. Steven McKinney From: r-devel-boun...@r-project.org [r

Re: [Rd] Indexing request

2011-01-06 Thread Steven McKinney
:) Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre From: r-devel-boun...@r-project.org [r-devel-boun...@r-project.org] On Behalf Of David Winsemius [dwinsem...@comcast.net] Sent: January 6, 2011 9

Re: [Rd] [R] RMySQL package on 64bit R for Windows

2010-07-16 Thread Steven McKinney
I think this is a question for R-devel so I'm cross-posting there with apologies. I've just acquired a Windows 7 64-bit box and also will need RMySQL eventually. Is there any information about issues involved with compiling RMySQL for Windows 64-bit? Steven McKinney Statistician Molecular

Re: [Rd] R Usage Statistics

2009-11-19 Thread Steven McKinney
as well. Press back with the reviewer. Reviewers can learn new things and will respond to arguments with good evidence behind them. Good luck! Steven McKinney From: r-devel-boun...@r-project.org [r-devel-boun...@r-project.org] On Behalf Of Kevin R

Re: [Rd] Surprising length() of POSIXlt vector (PR#14073)

2009-11-19 Thread Steven McKinney
I've checked the archives, and this problem crops up every few months going back for years. What I was not able to find was an explanation of why a function such as length.POSIXlt - function(x) { length(x$sec) } is a Bad Idea, or what it would break. listserv threads seem to end without

Re: [Rd] Surprising length() of POSIXlt vector (PR#14073)

2009-11-19 Thread Steven McKinney
-Original Message- From: Benilton Carvalho [mailto:bcarv...@jhsph.edu] Sent: Thursday, November 19, 2009 6:59 PM To: Steven McKinney Cc: 'm...@celos.net'; 'r-de...@stat.math.ethz.ch' Subject: Re: [Rd] Surprising length() of POSIXlt vector (PR#14073) Steve, I'm no expert

Re: [Rd] Bug in all.equal() or in the plm package

2009-11-10 Thread Steven McKinney
-Original Message- From: r-devel-boun...@r-project.org [mailto:r-devel-boun...@r- project.org] On Behalf Of Arne Henningsen Sent: Tuesday, November 10, 2009 2:24 AM To: Duncan Murdoch; r-devel@r-project.org; Yves Croissant; giovanni_mi...@generali.com; Achim Zeileis Subject: Re:

Re: [Rd] Cannot Change Function (PR#14041)

2009-11-04 Thread Steven McKinney
(Tot_sum_log) (-2) ) ) Best Steven McKinney Best, Stefan __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch

Re: [Rd] loadings function (PR#13886)

2009-08-11 Thread Steven McKinney
0.94634 v4 0.17998 0.24225 0.82757 v5 0.24211 0.88064 0.28560 v6 0.19277 0.95884 0.19621 Factor1 Factor2 Factor3 SS loadings1.89304 1.88576 1.79702 Proportion Var 0.31551 0.31429 0.29950 Cumulative Var 0.31551 0.62980 0.92930 Best Steven McKinney Statistician Molecular Oncology

Re: [Rd] Wishlist: Navigate to Index page of help when no topic (PR#13872)

2009-08-05 Thread Steven McKinney
Thanks Romain, I find index?survival more intuitive than my proposed ?survival:: Steven McKinney From: r-devel-boun...@r-project.org [r-devel-boun...@r-project.org] On Behalf Of Romain Francois [romain.franc...@dbmail.com] Sent: August 4, 2009 11

Re: [Rd] Wishlist: Navigate to Index page of help when no topic specified (PR#13860)

2009-08-04 Thread Steven McKinney
-Original Message- From: Duncan Murdoch [mailto:murd...@stats.uwo.ca] Sent: Tuesday, August 04, 2009 8:03 AM To: Steven McKinney Cc: r-de...@stat.math.ethz.ch; r-b...@r-project.org Subject: Re: [Rd] Wishlist: Navigate to Index page of help when no topic specified (PR#13860) On 7

Re: [Rd] Wishlist: Navigate to Index page of help when no topic specified (PR#13860)

2009-08-04 Thread Steven McKinney
-Original Message- From: Duncan Murdoch [mailto:murd...@stats.uwo.ca] Sent: Tuesday, August 04, 2009 5:06 PM To: Steven McKinney Cc: 'r-de...@stat.math.ethz.ch'; 'r-b...@r-project.org' Subject: Re: [Rd] Wishlist: Navigate to Index page of help when no topic specified (PR#13860

Re: [Rd] linking environments

2009-03-25 Thread Steven McKinney
...@dza.de URL: http://www.dza.de --- [[alternative HTML version deleted]] Steven McKinney, Ph.D. Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney +at+ bccrc +dot+ ca tel

Re: [Rd] p.adjust; n length(p) (PR#13519)

2009-02-11 Thread Steven McKinney
__ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel Best Steven McKinney, Ph.D. Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckin...@bccrc.ca tel: 604-675-8000

Re: [Rd] puzzled by cat() behaviour when argument '...' is a vector (and argument 'sep' contains \n)

2008-11-05 Thread Steven McKinney
://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email

Re: [Rd] Posting Guide

2008-06-06 Thread Steven McKinney
I'd recommend either having two or three good examples of acceptable posts at the end of the posting guide or at least some hyperlinks to good examples. Two or three contrasting poor posts would also be helpful. If people can see a brief email with working code AND the ever-essential

Re: [Rd] poly() can exceed degree k - 1 for k distinct points (PR#11251)

2008-04-24 Thread Steven McKinney
7.418009e-29 9.824087e-27 [11] 1.017082e-32 2.357175e-51 9.543887e-57 6.351670e-57 attr(,class) [1] poly matrix Steven McKinney -Original Message- From: [EMAIL PROTECTED] on behalf of John Maindonald Sent: Thu 4/24/2008 5:24 PM To: r-devel@r-project.org Subject: Re: [Rd] R-devel Digest

[Rd] 64-bit R-build on Mac OS X 10.4 - make check failures

2007-11-07 Thread Steven McKinney
Hi all, I compiled 64-bit R on an Apple Mac G5 running OS X, but it failed make check. Simon Urbanek suggested I post results to R-devel. On Nov 6, 2007, at 10:23 PM, Steven McKinney wrote: Hi Simon, Would you be able to give more guidance on how to compile 64-bit libiconv

Re: [Rd] Friday question: negative zero

2007-08-31 Thread Steven McKinney
version.string R version 2.5.1 (2007-06-27) Steven McKinney -Original Message- From: [EMAIL PROTECTED] on behalf of Duncan Murdoch Sent: Fri 8/31/2007 5:39 PM To: R Devel Subject: [Rd] Friday question: negative zero The IEEE floating point standard allows for negative zero, but it's hard

Re: [Rd] Embedded nuls in strings

2007-08-07 Thread Steven McKinney
graphics grDevices utils datasets methods base Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney +at+ bccrc +dot+ ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4

[Rd] model.matrix bug? Nested factor yields singular design matrix.

2007-05-17 Thread Steven McKinney
] contr.treatment Why is the Ax:Bb column being included? Have I missed a control parameter or some other way of specifying to model.matrix not to include this extra column? Any feedback appreciated. Best regards Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British

Re: [Rd] model.matrix bug? Nested factor yields singular design matrix.

2007-05-17 Thread Steven McKinney
attached packages: lme4 Matrix lattice 0.99875-0 0.99875-10.15-5 -Original Message- From: [EMAIL PROTECTED] on behalf of Steven McKinney Sent: Thu 5/17/2007 11:41 AM To: r-devel@r-project.org Subject: [Rd] model.matrix bug? Nested factor yields singular design matrix. Hi

[Rd] Minor logical bug in rbind.data.frame ?

2007-01-12 Thread Steven McKinney
- make.unique(as.character(unlist(rlabs)), sep = ) if (is.null(cl)) { as.data.frame(value, row.names = rlabs) } else { class(value) - cl attr(value, row.names) - rlabs value } } Steven McKinney Statistician Molecular Oncology and Breast Cancer

Re: [Rd] rm() deletes 'c' if c('a','b') is the argument (PR#9399)

2006-11-29 Thread Steven McKinney
Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: [EMAIL PROTECTED] tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada -Original Message- From: [EMAIL

Re: [Rd] rm() deletes 'c' if c('a','b') is the argument (PR#9399)

2006-11-29 Thread Steven McKinney
(sys.parent()), expand.dots = TRUE) .Internal(match.call(definition, call, expand.dots)) environment: namespace:base Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: [EMAIL PROTECTED] tel: 604-675-8000 x7561 BCCRC Molecular

Re: [Rd] Bug in Acrobat Reader 7 (or R?) with translucent text

2006-10-19 Thread Steven McKinney
(2006-10-03) powerpc-apple-darwin8.7.0 locale: en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8 Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: [EMAIL PROTECTED] tel: 604-675-8000 x7561 BCCRC Molecular

Re: [Rd] getMethods() not finding all methods

2006-10-12 Thread Steven McKinney
] on behalf of Seth Falcon Sent: Thu 10/12/2006 5:28 PM To: r-devel@stat.math.ethz.ch Subject: Re: [Rd] getMethods() not finding all methods Steven McKinney [EMAIL PROTECTED] writes: Running R2.4.0 on Apple Mac OS X 10.4.8, in Emacs ESS mode, and also R.app. In an attempt to learn a bit more

[Rd] Bug/problem reporting: Possible to modify posting guide FAQ?

2006-08-28 Thread Steven McKinney
If users post a bug or problem issue to an R-based news group (R-devel, R-help, BioC - though BioC is far more forgiving) they get yelled at for not reading the posting guide and FAQ. Please *_do_* read the FAQ, the posting guide, ... the yellers do say. So I read the BioC FAQ and it says...

Re: [Rd] [BioC] Errors using biocLite on Apple OS X

2006-07-18 Thread Steven McKinney
summarization of the issues arising when running biocLite on the Mac. Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: [EMAIL PROTECTED] tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4