Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-25 Thread cstrato
Dear Herve, I have just tested the modification of Makefile.win: clean: rm -f $(MYOBJ) *.a *.d *.rc xpsLinkDef.h and it was sufficient to eliminate the warning message. Thus R CMD check seems indeed to run the clean step. I have just uploaded the new version to BioC2.7. Best regards

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-15 Thread cstrato
Dear Duncan, dear Herve, Thank you both for your help and suggestions. I think that you are both right: In principle I do not want to put these files in the source tarball (and I did not in the past), however because of the way R CMD check works this seems to be the only possibility to get

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-15 Thread Dirk Eddelbuettel
On 15 September 2010 at 22:39, cstrato wrote: | Dear Duncan, dear Herve, | | Thank you both for your help and suggestions. I think that you are both | right: | | In principle I do not want to put these files in the source tarball (and | I did not in the past), however because of the way R CMD

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-15 Thread cstrato
Dear Dirk, Thank you for this suggestion, however since I am not very good in creating Makefiles I would appreciate if you could explain how to filter at the compile stage. These are the lines which I think are essential: xps.dll: $(MYOBJ) $(LINK) /dll /def:xps.def /out:xps.dll fp10.obj

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-15 Thread Hervé Pagès
On 09/15/2010 01:51 PM, Dirk Eddelbuettel wrote: On 15 September 2010 at 22:39, cstrato wrote: | Dear Duncan, dear Herve, | | Thank you both for your help and suggestions. I think that you are both | right: | | In principle I do not want to put these files in the source tarball (and | I did not

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-14 Thread cstrato
: Monday, September 13, 2010 2:08 PM To: r-devel@r-project.org Subject: [Rd] Problem with WARNING...headers with CRLF line endings Dear all, When running R CMD check on Windows XP to test my package I get the following warning message: * checking line endings in C/C++/Fortran sources/headers

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-14 Thread cstrato
Dear Dirk, Thank you for this suggestion, however I have no idea where this code could be used. As I have said, this file is created automatically during the compilation by the compiler, and I have no idea at which point R CMD check does check for CRLF line endings, and how to interfere

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-14 Thread Simon Urbanek
, Simon On 9/14/10 2:06 AM, William Dunlap wrote: -Original Message- From: r-devel-boun...@r-project.org [mailto:r-devel-boun...@r-project.org] On Behalf Of cstrato Sent: Monday, September 13, 2010 2:08 PM To: r-devel@r-project.org Subject: [Rd] Problem with WARNING...headers

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-14 Thread cstrato
, 2010 2:08 PM To: r-devel@r-project.org Subject: [Rd] Problem with WARNING...headers with CRLF line endings Dear all, When running R CMD check on Windows XP to test my package I get the following warning message: * checking line endings in C/C++/Fortran sources/headers ... WARNING Found

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-14 Thread Hervé Pagès
Message- From: r-devel-boun...@r-project.org [mailto:r-devel-boun...@r-project.org] On Behalf Of cstrato Sent: Monday, September 13, 2010 2:08 PM To: r-devel@r-project.org Subject: [Rd] Problem with WARNING...headers with CRLF line endings Dear all, When running R CMD check on Windows XP

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-14 Thread cstrato
-boun...@r-project.org] On Behalf Of cstrato Sent: Monday, September 13, 2010 2:08 PM To: r-devel@r-project.org Subject: [Rd] Problem with WARNING...headers with CRLF line endings Dear all, When running R CMD check on Windows XP to test my package I get the following warning message: * checking line

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-14 Thread Hervé Pagès
Message- From: r-devel-boun...@r-project.org [mailto:r-devel-boun...@r-project.org] On Behalf Of cstrato Sent: Monday, September 13, 2010 2:08 PM To: r-devel@r-project.org Subject: [Rd] Problem with WARNING...headers with CRLF line endings Dear all, When running R CMD check on Windows XP

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-14 Thread Duncan Murdoch
On 14/09/2010 6:08 PM, Hervé Pagès wrote: On 09/14/2010 02:58 PM, cstrato wrote: Dear Herve, Thank you for your reply, however maybe I was not quite clear. The files xpsDict.h and xpsDict.cxx are automatically created by the ROOT framework during compilation on every architecture. on every

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-14 Thread Hervé Pagès
On 09/14/2010 03:30 PM, Duncan Murdoch wrote: On 14/09/2010 6:08 PM, Hervé Pagès wrote: On 09/14/2010 02:58 PM, cstrato wrote: Dear Herve, Thank you for your reply, however maybe I was not quite clear. The files xpsDict.h and xpsDict.cxx are automatically created by the ROOT framework during

[Rd] Problem with WARNING...headers with CRLF line endings

2010-09-13 Thread cstrato
Dear all, When running R CMD check on Windows XP to test my package I get the following warning message: * checking line endings in C/C++/Fortran sources/headers ... WARNING Found the following sources/headers with CR or CRLF line endings: src/xpsDict.h The problem is that this file is

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-13 Thread Dirk Eddelbuettel
On 13 September 2010 at 23:07, cstrato wrote: | Dear all, | | When running R CMD check on Windows XP to test my package I get the | following warning message: | | * checking line endings in C/C++/Fortran sources/headers ... WARNING | Found the following sources/headers with CR or CRLF line

Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-13 Thread William Dunlap
-Original Message- From: r-devel-boun...@r-project.org [mailto:r-devel-boun...@r-project.org] On Behalf Of cstrato Sent: Monday, September 13, 2010 2:08 PM To: r-devel@r-project.org Subject: [Rd] Problem with WARNING...headers with CRLF line endings Dear all, When running R