Re: [Rd] default min-v/nsize parameters

2015-01-20 Thread Martin Maechler
Peter Haverty haverty.pe...@gene.com on Mon, 19 Jan 2015 08:50:08 -0800 writes: Hi All, This is a very important issue. It would be very sad to leave most users unaware of a free speedup of this size. These options don't appear in the R --help output. They really should

Re: [Rd] default min-v/nsize parameters

2015-01-20 Thread Henrik Bengtsson
Thanks for this. Anyone know how I can find what those initial settings are from within R? Do I need to parse/look at both environment variables R_NSIZE and R_VSIZE and then commandArgs()? /Henrik On Tue, Jan 20, 2015 at 1:42 AM, Martin Maechler maech...@stat.math.ethz.ch wrote: Peter Haverty

Re: [Rd] default min-v/nsize parameters

2015-01-19 Thread Peter Haverty
Hi All, This is a very important issue. It would be very sad to leave most users unaware of a free speedup of this size. These options don't appear in the R --help output. They really should be added there. Additionally, if the garbage collector is working very hard, might it emit a note about

Re: [Rd] default min-v/nsize parameters

2015-01-17 Thread Nathan Kurz
On Thu, Jan 15, 2015 at 3:55 PM, Michael Lawrence lawrence.mich...@gene.com wrote: Just wanted to start a discussion on whether R could ship with more appropriate GC parameters. I've been doing a number of similar measurements, and have come to the same conclusion. R is currently very

Re: [Rd] default min-v/nsize parameters

2015-01-17 Thread luke-tierney
Martin Morgan discussed this a year or so ago and as I recall bumped up these values to the current defaults. I don't recall details about why we didn't go higher -- maybe Martin does. I suspect the main concern would be with small memory machines in student labs and less developed countries. If

[Rd] default min-v/nsize parameters

2015-01-15 Thread Michael Lawrence
Just wanted to start a discussion on whether R could ship with more appropriate GC parameters. Right now, loading the recommended package Matrix leads to: library(Matrix) gc() used (Mb) gc trigger (Mb) max used (Mb) Ncells 1076796 57.61368491 73.1 1198505 64.1 Vcells 1671329 12.8