Re: [Rd] Problem building R with Intel MKL v10 BLAS

2008-01-30 Thread Ei-ji Nakama
Hi. 2008/1/25, Michael Braun [EMAIL PROTECTED]: NO Hi. I'm not sure if this is an R-help or R-devel problem, so I'm starting here in the hope that someone can help (and willing to go to the other list if it's more appropriate). I think I am following all of the instructions in the various

[Rd] [rfc] Package to access the internal zlib library.

2008-01-30 Thread jason
To make R.matlab's readMat work for me[1] I needed access to zlib's uncompress function. R already links with zlib, and sometime last year I hobbled together a quick package to get at a few functions. It's my first package, so I would love feedback both on the package and its purpose. I've

Re: [Rd] [rfc] Package to access the internal zlib library.

2008-01-30 Thread Duncan Temple Lang
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 There is also the Rcompression library from www.omegahat.org/Rcompression and directly available via install.packages() from the www.omegahat.org/R repository. This deals with various compression schemes and does things in memory. Hopefully

Re: [Rd] [rfc] Package to access the internal zlib library.

2008-01-30 Thread Prof Brian Ripley
On Wed, 30 Jan 2008, [EMAIL PROTECTED] wrote: To make R.matlab's readMat work for me[1] I needed access to zlib's uncompress function. R already links with zlib, and sometime last Not so: R can be linked to the system's zlib, and otherwise uses its own copy which is not intended for use by

Re: [Rd] A safe do.call

2008-01-30 Thread Martin Maechler
hw == hadley wickham [EMAIL PROTECTED] on Tue, 29 Jan 2008 09:26:24 -0600 writes: Or is this a bug in glm? It certainly seems that the documentation should mention that ... is passed to glm.control, which only takes three arguments. I realise that this doesn't come

[Rd] R 2.6.2 scheduled for February 8

2008-01-30 Thread Peter Dalgaard
This is to announce that we plan to release R version 2.6.2 on Friday, February 8, 2008. A couple of annoying bugs were discovered after 2.6.1, and given the weakness of prerelease testing, we find it better to increase the number of patch releases. The source tarballs will be made available

Re: [Rd] A safe do.call

2008-01-30 Thread hadley wickham
hw That seems a perfectly good reason not to use ... - but hw if you are going to use ... it seems like you shouldn't hw warn on mismatched argument names. I disagree. One famous example on this was -- in S-plus, early 1990s -- known about S users back then, and it happened

Re: [Rd] [rfc] Package to access the internal zlib library.

2008-01-30 Thread Duncan Murdoch
On 1/30/2008 4:20 AM, Prof Brian Ripley wrote: On Wed, 30 Jan 2008, [EMAIL PROTECTED] wrote: To make R.matlab's readMat work for me[1] I needed access to zlib's uncompress function. R already links with zlib, and sometime last Not so: R can be linked to the system's zlib, and otherwise

Re: [Rd] A safe do.call

2008-01-30 Thread Prof Brian Ripley
This is a 'White Book' function, not really ours to re-design. (Although the glm help page in the White Book's description of '...' never was correct of any S-PLUS that I used, and doesn't make a great deal of sense.) I never really saw the point of glm.control(), but it might have allowed for

[Rd] Understanding an R improvement that already occurred.

2008-01-30 Thread Jay Emerson
I was surprised to observe the following difference between 2.4.1 and 2.6.0 after a long overdue upgrade a few months ago of our departmental server. It wasn't a bug fix, but a subtle improvement. Here's the simplest example I could create. The size is excessive, on the order of the Netflix

Re: [Rd] Understanding an R improvement that already occurred.

2008-01-30 Thread Henrik Bengtsson
On Jan 30, 2008 7:20 AM, Jay Emerson [EMAIL PROTECTED] wrote: I was surprised to observe the following difference between 2.4.1 and 2.6.0 after a long overdue upgrade a few months ago of our departmental server. It wasn't a bug fix, but a subtle improvement. Here's the simplest example I

[Rd] The standalone Rmath library and VC++ 2003

2008-01-30 Thread Oran Johnson
Linking my VC++ application with the standalone Rmath library yields the following; -- Build started: Project: Complex plugin, Configuration: Debug Win32 -- Linking... Creating library .\../Debug/complex_plugin.lib and object .\../Debug/complex_plugin.exp libRmath.a(mlutils.o)

[Rd] Documentation of the dev.copy2eps function. (PR#10656)

2008-01-30 Thread clement . raievsky
Full_Name: clement raievsky Version: R version 2.4.0 Patched (2006-11-25 r39997) OS: debian (stable/testing) Submission from: (NULL) (132.210.56.80) The documentation of the dev.copy2eps() function should mention the file option which set the output file name Thanks for the wonderfull software.

[Rd] kruskalmc(pgirmess) (PR#10664)

2008-01-30 Thread sommerfeld
Full_Name: Ralf Sommerfeld Version: 2.3.1 OS: Windows XP Submission from: (NULL) (193.175.214.49) The kruskalmc function runs a multiple comparison test after a Kruskal-Wallis test. I used the function for treatment comparison (default) as compared to a comparison against a control. The

Re: [Rd] numbers after dot missing (PR#10663)

2008-01-30 Thread ripley
x - 76079320.32+21374.27+7630.04+28432.47 print(x, digits=13) [1] 76136757.1 If you want trailing zeros printed, use sprintf(). Reading ?print.default will explain this to you -- it is working as documented. On Wed, 30 Jan 2008, [EMAIL PROTECTED] wrote: Full_Name: Michael Version: 2.6.1

Re: [Rd] numbers after dot missing (PR#10663)

2008-01-30 Thread Jeff Ryan
YOU can fix the problem : ) Try: identical(76079320.32 + 21374.27 + 7630.04 + 28432.47,76136757.1) [1] TRUE identical(76079320.32 + 21374.27 + 7630.04 + 28432.47,76136757) [1] FALSE options(digits=10) 76079320.32 + 21374.27 + 7630.04 + 28432.47 [1] 76136757.1 sessionInfo() R version

Re: [Rd] The standalone Rmath library and VC++ 2003

2008-01-30 Thread Prof Brian Ripley
On Tue, 29 Jan 2008, Oran Johnson wrote: Linking my VC++ application with the standalone Rmath library yields the following; Looks like you compiled the standalone Rmath library with MinGW. You can't expect to mix-and-match compilers and link together a static library built under another

Re: [Rd] The standalone Rmath library and VC++ 2003

2008-01-30 Thread Prof Brian Ripley
On Wed, 30 Jan 2008, Oran Johnson wrote: Yes, I used Rtools to compile the standalone Rmath library. However, C:\Rtools\MinGW\lib\libm.a does not contain log1p; C:\Rtools\MinGW\lib\libmingwex.a does. Once I replaced libm.a with libmingwex.a, the application linked successfully and the

[Rd] numbers after dot missing (PR#10663)

2008-01-30 Thread michael . krueckl
Full_Name: Michael Version: 2.6.1 OS: Windows XP Submission from: (NULL) (81.223.30.219) i recognized a problem with the numbers behind a dot, an example: 76079320.32+21374.27+7630.04+28432.47 [1] 76136757 // should be 76,136,757.10 32+27+4+47 // proof it should be xxx.1 [1] 110 that kind of

Re: [Rd] Documentation of the dev.copy2eps function. (PR#10656)

2008-01-30 Thread Prof Brian Ripley
On Tue, 29 Jan 2008, [EMAIL PROTECTED] wrote: Full_Name: clement raievsky Version: R version 2.4.0 Patched (2006-11-25 r39997) which is over a year old: we are at 2.6.2 RC OS: debian (stable/testing) Submission from: (NULL) (132.210.56.80) The documentation of the dev.copy2eps() function

[Rd] R-intro.info.gz ellipsis node bug [SEC=UNCLASSIFIED] (PR#10658)

2008-01-30 Thread L . Hanson
Dear r-bugs, I think I may have uncovered a bug in the file R-intro.info.gz When running the info R-intro command on our Ubuntu 7.10 server, on which R 2.6.1 is installed, everything works fine until I try to access the node named The ellipsis argument (...), and then I observe the

[Rd] segfault in gregexpr()

2008-01-30 Thread Herve Pages
Hi, Tried with R 2.6 and R 2.7: gregexpr(, abc, fixed=TRUE) *** caught segfault *** address 0x1c09000, cause 'memory not mapped' Traceback: 1: gregexpr(, abc, fixed = TRUE) Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving

Re: [Rd] segfault in gregexpr()

2008-01-30 Thread Seth Falcon
Hi Herve, Thanks for the report. I can reproduce this with latest R-devel. perl=TRUE is also broken. I have a patch which I am testing. With it, I get: gregexpr(, abc) [[1]] [1] 1 2 3 attr(,match.length) [1] 0 0 0 gregexpr(, abc, fixed=TRUE) [[1]] [1] 1