Martin Morgan mtmor...@fhcrc.org
on Tue, 7 Feb 2012 19:31:41 -0800 writes:
On 02/07/2012 04:08 PM, Hervé Pagès wrote:
Hi,
This is what I get with recent R devel on a 64-bit Ubuntu laptop:
mydf - data.frame(a=1:2080, b=1001:2040, c=letters, d=LETTERS,
Hi all,
I'm running into an error when using R CMD check on a package I inherited
and I'm now trying to clean up. There are known issues with the Rd files
(they definitely need to get updated) resulting in a couple of warnings,
but the error occurs before check reaches the Rd files. Below is a
Hi! All
I want to keep some file which user defined when re-installing or updating
package. Is there any way to do?
Thanks.
--Heewon--
[[alternative HTML version deleted]]
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R-devel@r-project.org mailing list
User defined files are not touched if you update a package *unless* you
put it into the directory structure of the package, where a user defined
file is not intended to be ...
Uwe
On 08.02.2012 01:02, 전희원 wrote:
Hi! All
I want to keep some file which user defined when re-installing or
It may not (yet) be canonical, but it is (a) easy to remember and (b)
likely to be recognized easily by someone looking at the structure.
On 2/7/2012 5:37 PM, Simon Urbanek wrote:
On Feb 7, 2012, at 4:34 PM, Roebuck,Paul L wrote:
We have an R package which needs to include a JAR file.
Is
On 2/7/12 5:37 PM, Simon Urbanek simon.urba...@r-project.org wrote:
On Feb 7, 2012, at 4:34 PM, Roebuck,Paul L wrote:
We have an R package which needs to include a JAR file.
Is there a canonical directory for it?
rJava defines java for that purpose (see ?.jpackage).
How canonical that is
On 07.02.2012 19:13, Hadley Wickham wrote:
Hi all,
Am I using the correct syntax to set a custom R_LIBS when running R
CMD INSTALL from the command line?
I get:
R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/
# Desktop : R_LIBS=/Users/hadley/R-dev R CMD INSTALL
I wonder it works that far. It won't for me on Windows nor Linux, because
system2 passes the whole thing shQuoted to the shell. Hence it is highly
shell dependent what happens with the ill formed command.
Well I was using the env argument to system2, which claims to be
cross-platform (at least
On 8 February 2012 at 19:26, Uwe Ligges wrote:
|
|
| On 07.02.2012 19:13, Hadley Wickham wrote:
| Hi all,
|
| Am I using the correct syntax to set a custom R_LIBS when running R
| CMD INSTALL from the command line?
|
| I get:
|
| R_LIBS=/Users/hadley/R-dev R CMD INSTALL
On 08.02.2012 19:36, Hadley Wickham wrote:
I wonder it works that far. It won't for me on Windows nor Linux, because
system2 passes the whole thing shQuoted to the shell. Hence it is highly
shell dependent what happens with the ill formed command.
Well I was using the env argument to
On 8 February 2012 at 20:05, Uwe Ligges wrote:
| Anyway, this won't work under a Windows shell, I believe. At least, I do
| not know how to set an env variable and run RCMD INSTALL in a Windows
| shell as a one liner - independent of R.
FWIW this issue was addressed by Oleg years ago in
2012/2/8 Uwe Ligges lig...@statistik.tu-dortmund.de:
On 08.02.2012 19:36, Hadley Wickham wrote:
I wonder it works that far. It won't for me on Windows nor Linux, because
system2 passes the whole thing shQuoted to the shell. Hence it is highly
shell dependent what happens with the ill formed
I get an error when trying to compile a FORTRAN source file for use in a
package that I am developing. The error, reported in 00install.out is
below.
* installing *source* package 'USGSstats' ...
** libs
*** arch - i386
C:/PROGRA~1/R/R-214~1.1/etc/i386/Makeconf:194: warning: overriding recipe
For what it is worth, the S+ package system uses
the java directory in source packages to store
java source code (under pkg/java/src/, using the usual
directory structure that follows the class structure
under there), prebuilt jar files (in pkg/java/prebuiltjars,
no subdirectories), and a Makevars
It's hard to provide a reproducible example because it depends on
exactly what package you have installed where, but I had hoped that
this would at least illustrate my problem - R CMD install doesn't seem
to be respecting R_LIBS. I'm trying to understand whether this is a
bug, or something I
Unfortunately we cannot mandate JDK so packages have to use the build stage for
compilation so the S+ model doesn't work. I think java is more consistent than
src/java - jars
Sent from my iPhone
On Feb 8, 2012, at 3:27 PM, William Dunlap wdun...@tibco.com wrote:
For what it is worth, the S+
We don't mandate a given JDK (including the compiler,
javac), but we do supply the JRE. We do require that the
java compiler be able to produce code that the JRE accepts
(we test-run javac with a variety of common version-type
flags to try to find one that works with our JRE).
It is
What would be involved in modifying rJava's .jpackage() method
to search in both locations ('java' and/or 'jars') for JAR files
to be added to the CLASSPATH on JVM initialization?
On 2/8/12 4:12 PM, William Dunlap wdun...@tibco.com wrote:
We don't mandate a given JDK (including the compiler,
Hi Martin,
On 02/07/2012 08:32 AM, Martin Maechler wrote:
Martin Maechlermaech...@stat.math.ethz.ch
on Mon, 6 Feb 2012 15:35:36 +0100 writes:
On Sat, Feb 4, 2012 at 10:38 AM, Martin Maechler
maech...@stat.math.ethz.ch wrote:
The help has
On Feb 8, 2012, at 5:31 PM, Roebuck,Paul L wrote:
What would be involved in modifying rJava's .jpackage() method
to search in both locations ('java' and/or 'jars') for JAR files
to be added to the CLASSPATH on JVM initialization?
Well, it wouldn't take much but I don't like that idea. The
I've just noticed that with a recent R devel on Windows, R CMD build
sources ~/.Rprofile, e.g.
RCMD build
Running ~/.Rprofile
R CMD build
Running ~/.Rprofile
FYI R --no-init-file R --vanilla still avoid this.
sessionInfo()
R Under development (unstable) (2012-02-08 r58297)
Platform:
Thanks Martin. H.
On 02/08/2012 12:55 AM, Martin Maechler wrote:
Martin Morganmtmor...@fhcrc.org
on Tue, 7 Feb 2012 19:31:41 -0800 writes:
On 02/07/2012 04:08 PM, Hervé Pagès wrote:
Hi,
This is what I get with recent R devel on a 64-bit Ubuntu laptop:
Hi,
Since C++ code compiled with g++ 4.6.3 on Windows (the version included
in latest Rtools) now can produce things like '1.#IND' when writing
doubles to a file (using the operator), I wonder whether scan()
shouldn't support those things. Right now (with recent R devel and
latest Rtools) we
On 12-02-08 8:59 PM, Hervé Pagès wrote:
Hi,
Since C++ code compiled with g++ 4.6.3 on Windows (the version included
in latest Rtools) now can produce things like '1.#IND' when writing
doubles to a file (using the operator), I wonder whether scan()
shouldn't support those things. Right now
2012/2/8 Duncan Murdoch murdoch.dun...@gmail.com:
On 12-02-08 8:59 PM, Hervé Pagès wrote:
Hi,
Since C++ code compiled with g++ 4.6.3 on Windows (the version included
in latest Rtools) now can produce things like '1.#IND' when writing
doubles to a file (using the operator), I wonder whether
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